Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01077 ATGGAGTTGAAGCTGGAGAAACCCATGTCGAAAAAAGCTCTCAACCTCGCCGGAGACGTTTCAGAAAGTGCAAGCACCGAACGTAATGTAGCCAGAAGTTCCGGAGGTTGGGGGCAGTCGAGGTCATTTCAGACGATGGAAAAGGACGGCGCTCTGTTTCCCGGCACGGTGGAGGAAAGGCTGGTTTGGCTGCGATGTCAGATTATAGGCAACACTCACACAAGCGACAGCTATGTCGGGCAGCATACAACAAAGATGGCGAACGATGCAATCGCATACATCAAGAAGTGCTTAGGAGGTGGAGAAGAAGAAGCGCTTGTGTTCTGTGGCCAAGGCGCAACTTCCGCCATTAAAAGACTGCAAGAAGTGATGGGAATTGCAGTGCCATCCATTCTGAGAGACAGGGTAATAGGGACCCTAAAGGAAGAAGAAAGGTGGGTTGTTTTTGTTGGACCTTATGAGCATCACTCCAACCTCCTCTCATGGCGGCAGAGCTTGGCGGAAGTGGTAGAAATTGGAATGGATGAAAATGGGGTTTTAGACATTGAGATGCTCAGATCCCAACTTGAGGCGTATAAGAAAGCTGGAAAGAGGCTAATTTTGGGTTCTTTCTCAGCTTGTAGTAATGTCACAGGAATCTATTCAGATACCAAAGCTATTGCTACACTGATCCATGAATATGGAGGCCATGTTTGCTTTGATTTTGCTGCAAGTGGCCCTTATGTGCAAATAGATATGCAATCAGGGGAAATTGATGGCTATGATGCGATTGTTCTAAGTACTCACAAGTTTCTTGGAGGGCCTGGATCACCTGGAATCCTTCTGATGAACAAAAGTCTCTATAAGTTGAAGTCATCTCCTCCATCAACTTGTGGGGGTGGTACTGTGAACTATGTCAATGGCTTCAGTGAAAAGGACACACTGTATAATGAAGACATAGAAGAGAGGGAAAACGGTGGAACACCACAGATTATAGGAATAATAAGAGCAGCTATGGCTTTTGAGGTAAAAGAATATATCAGCAACCAAGAGATAGAGAAGCAAGAGCACCAGTACGTAGAGAGGGCTTTGAAGAGACTTCTCCCAAATAGAAGCATCTGCATTTTAGGGAGCAAGTCTTCTAAGCGACAAGCTATATTATCTTTTATCGTTTACTCTTTGACTAATTCGTCGCCCAACTGTATCACTGATAGATTATGTAAACCTAACAGCAGAGAAAAGGCTGAAAAGATTTACATGTGGAAAGAGACAGGGTATATGAGAGCAAAACCTCTTCATGGTCCTTTTGTTGCAGCGCTCCTGAGCGATCTGTTCGGCATTCAGGCTCGAGGAGGATGCAGTTGTGCCGGTCCCTATGGTCACAAGCTGCTCAACATTGATGAAAAATGCTCGCATGCCTACAGATCTGCCATTGCTAAGGGCTATGCTGGAATAAAACCTGGATGGACAAGAATAAGCTTTCCCTACTACATGCCAAATGAGGAGTTCGAGTTCATTTTAAAAGCTTTAGAATTCATAGCTGATTATGGACAAAGATTCCTTCCTTTGTATGCCTTCAATTTGAGAACTGGCAGCTGGACACCGAAGAAAACGGAGCTCGCCGACCTACTTGGGAAGGAGAATTACAGAAACAGTCACATCTTAGCATTCAAAAACCGGTGCGCCAATGCAGAAGCTAAGTTAGCAGCCACAGTATACAAGCATAAATCATATTTAGAATCTGCCAAAAAAATCGCAAATCTTCTCCCCAAGTTTCCTCCTGAGAGAAAGCTTCACGAGGACATTGAATCCTCTCTATTATACTTCAGAATCTAG 1815 44.46 MELKLEKPMSKKALNLAGDVSESASTERNVARSSGGWGQSRSFQTMEKDGALFPGTVEERLVWLRCQIIGNTHTSDSYVGQHTTKMANDAIAYIKKCLGGGEEEALVFCGQGATSAIKRLQEVMGIAVPSILRDRVIGTLKEEERWVVFVGPYEHHSNLLSWRQSLAEVVEIGMDENGVLDIEMLRSQLEAYKKAGKRLILGSFSACSNVTGIYSDTKAIATLIHEYGGHVCFDFAASGPYVQIDMQSGEIDGYDAIVLSTHKFLGGPGSPGILLMNKSLYKLKSSPPSTCGGGTVNYVNGFSEKDTLYNEDIEERENGGTPQIIGIIRAAMAFEVKEYISNQEIEKQEHQYVERALKRLLPNRSICILGSKSSKRQAILSFIVYSLTNSSPNCITDRLCKPNSREKAEKIYMWKETGYMRAKPLHGPFVAALLSDLFGIQARGGCSCAGPYGHKLLNIDEKCSHAYRSAIAKGYAGIKPGWTRISFPYYMPNEEFEFILKALEFIADYGQRFLPLYAFNLRTGSWTPKKTELADLLGKENYRNSHILAFKNRCANAEAKLAATVYKHKSYLESAKKIANLLPKFPPERKLHEDIESSLLYFRI 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8058099 8060361 + CmoCh03G010770.1 Cmo03g01077 378540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01077 604 MobiDBLite consensus disorder prediction 19 42 - -
Cmo03g01077 604 MobiDBLite consensus disorder prediction 16 42 - -
Cmo03g01077 604 Gene3D Aspartate Aminotransferase, domain 1 336 510 IPR015422 GO:0003824
Cmo03g01077 604 Gene3D - 64 335 IPR015421 GO:0003824
Cmo03g01077 604 Pfam Aminotransferase class-V 68 385 IPR000192 -
Cmo03g01077 604 PANTHER - 69 604 - -
Cmo03g01077 604 SUPERFAMILY PLP-dependent transferases 53 504 IPR015424 -
Cmo03g01077 604 PANTHER CYSTEINE DESULFURASE 69 604 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01077 - - - cmax:111497234 979.933
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01077 Cmo-Chr3:8058099 Cmo02g01333 Cmo-Chr2:7911851 7.78E-06 dispersed
Cmo03g01077 Cmo-Chr3:8058099 Cmo07g00821 Cmo-Chr7:3832096 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1290 . . . . . . . Bma15g00794 . . Cma03g01091 . Car03g00983 . . Cpe19g00531 Cpe10g00339 . . . . . . . Cla01g01518 Cam01g1588 Cec04g1231 Cco04g1302 Clacu01g1613 Cmu01g1499 Cre04g1177 . . . . Lsi01g01147 . . Cme08g01081 . Blo06g00197 . . . . . . . Cmo03g01077 . . . . . . . . . . . . . . . . . . . . . . Csa06g02784 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005411 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 3 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g01077 Cmo_Chr02 FPKM 176.644058 176.989532 246.635651 243.101486 170.874664 202.621063 187.507904 192.797043 202.217499 211.496185
Cmo03g01077 Cmo_Chr03 FPKM 312.196136 325.106415 194.577744 185.449265 283.613464 350.935516 279.064453 224.534409 212.930328 214.093689
Cmo03g01077 Cmo_Chr07 FPKM 328.141541 353.829712 282.13739 269.74881 280.89621 389.189514 279.981171 381.262848 369.092651 346.410278
Cmo03g01077 Cmo_Chr20 FPKM 373.608765 395.734314 300.883789 290.731079 250.87146 267.086853 249.378159 345.404053 358.88501 365.496979