Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01084 ATGGCTATCGTTGAATCAATACTTGATCTTCAGGTACAAGATCCGCCTGAGGAGGAGTTCTATTCAGCTGATTTGACTTGGACCAAGTTTGGCACTGTCGAACATCATGATGAAGTAGCTTTGATTCCTTATGTCCGAGTAGATGCATTTATAGTTGGTGAATGTACTAATATAGAGTGCCCGACCCGGTTTCATATTGAGAAGGGAAAGAAACGATCGATGGGAAGCTTGAAAGAGTTCAAGGATGATGAATATTTGGAATATCGACAGTATTGGTGCTCATTTGGTCCTGAAAATTATGGGGAAGGTGGATGTATTTTACCCAGTAGAAGATATAGGCTTAACACGCGAAATCGTGCTGCTAGACCTCAATCAATGCGAGGTTGCACCTGCCATTTTGTTGTAAAGCGATTGTACGCCCGCCCATCTCTTGCACTTATAATATATAATGAGAGGCGTCATGTGAACAAGTCTGGCTTTGTTTGCCATGGGCCACTCGACAGAGAGGCCATTGGCCCTAATGCCAATAGGATCCCATATATTTGTAATGAGATCCAACAACAAACAATGTCAATGATTTATCTGGGAATTCCTGAGGCAAACATTGTTGAGAAACATCTTGAGTGTCTTCAGCGATACTGTGGTTCAAATGCAAAAGCAAACAGTCTTGCTTCCCAGTATGTTCACAAACTTGGGATGATCATCAAACGGTCTACCCATGAGCTCGATCTGGATGATCAAGCTAGCATTCGCATGTGGGTTGAGCGCAATAAAAAATCCATATTTATTTATCAGGATACTTCAGAAGAAAATCCTTTCATTCTTGGGATTCAAACAGAATGGCAATTGCAACAGATGATTCGGTTTGGCCATCGTAGTCTCATTGCTGCTGATTCAACATTTGGCATTAAGAGGCTTAAGTACCCCCTGTGTACACTTCTTGTGTTTGATTCTAGACAGCATGCACTCCCTGTTGCATGGATCATCACTCGCAGCTTTGCAAAATCAGATGTATCCAAATGGATGAAGGCCTTACTTGATCGTGCTCATTCTGTAGAGCCCGGATGGAAAGTTAGTGGGTTTTTAATTGACGACGCAGCCACAGAGATTGATCCTATCACGGACATATTCTGTTGTCCTGTGCTTTTTTCCCTTTGGCGCATTCGTAGATCATGGCTAAAAAATGTTGTTAGGAAATGCAGTAGCATTGAAGTTCAGAGGGAAATGTTCAAACGGCTGGGAAAATTAGTGCACAGCATTTGGGACGGAGTCGATACTTCGGTTGTCTTGGAAGATTTTATCCGTGATTTCATTGACCAAACTGCTTTCATGGAATATTTCAAGGGTTGTTGGGTGCCAAAGATTGAGATGTGGCTTTCTGCTATGAGAGCTTTTCCACTTGCAAGCCAAGAGGCATCTGGTGCCATTGAAGCCTATCACATGAAGCTGAAGGCAAAACTGTTTGATGACTCTCATCTTGGTGCTTTCCAGAGGGTGGACTGGTTGGTTCACAAGTTGACCACTGAATTGCATTCAACCTACTGGCTAGATCGATACGCCGATGAAAGTGATTCATTTCAAAATGTCAAGGAGGAGTATATTTCTTCTACTTCTTGGCACCGTGCGCTGCAAATTCCAGATTCTTCAGTTTCCTTGGATGAGGAAAATCACCTTTTTGCCAAAGTTCTGAGCCAAAAGGACAGCAGTGTTTCACATATAGTTTGGAATCCAGGGTCAGAATTCTCATTTTGCGATTGTTCTTGGTCATTGCAAGGAAATCTCTGCAAACATGTGATCAAGGTGAATATGATATGTGAAAATCGCCCGAGTTACAAACCTTCCATGTCTTTTCAATCATTTGAGGAAATACTGATGAATATGTGGAAGCTACCAATGGATGATTCTGTTGCCTTGGATGTGTCAATGGCTTGGACCCATCAGATCCTTGATGAAATTCAGAAACTAGTTGAATTGAATTCTTCAAATGATATTAGCTCTGTGGTAAATAAGCTGCCCTTGAAATGGGCCTCTGGAAAGGGAAGAACCAGTTGTAGGAAACCATCATCTACCGTGGCTTTTCCATTGGAATCCAATATTGTCAAAAAGGCCATGCCAAAGAAGAACCGGAAAAGAAAAAGATTATCTGGTGGCTTATGGAGTAAAAAGCACAGATTACAACTAGCACGTGGTATGGTGCGGATATGTCCACACAAAAGCATAGCTCGAGTCTTGCCGTTGAGGTCCTTTAGAATTTACCAGGAATCATTGCAGGAATATTTGCTGAGACCTACGCAGCAAGCAATGGCGACCATGAATTCCAGTGTTCTGGCTTGCAACTACGCCATTTCAGGCGCGGGATCGGCCGACCTGAGCTCTAAAATCAACGCTGCCCCTTCTGTTGCATCTCCTGGGGTTGTGGGTTACAAGTTGCCTGCGATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCCAAGAATGACGGAAGGAGGTCTGCGCTTCTTTACCTTGGTGCCACCCTCTTTGCTGCGGCTGCGGCTGCCTCCAACTCCTCTGCTAATGCTGGAGTCATTGAAGAGTACCTTGAGAAGAGTAAAGCTAACAAGGAACTGAATGACAAGAAAAGATTGGCAACAAGTGGGGCAAACTTTGCAAGGGCATACACCGTTCAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCTAAACAAAAGGTTTGA 2733 43.51 MAIVESILDLQVQDPPEEEFYSADLTWTKFGTVEHHDEVALIPYVRVDAFIVGECTNIECPTRFHIEKGKKRSMGSLKEFKDDEYLEYRQYWCSFGPENYGEGGCILPSRRYRLNTRNRAARPQSMRGCTCHFVVKRLYARPSLALIIYNERRHVNKSGFVCHGPLDREAIGPNANRIPYICNEIQQQTMSMIYLGIPEANIVEKHLECLQRYCGSNAKANSLASQYVHKLGMIIKRSTHELDLDDQASIRMWVERNKKSIFIYQDTSEENPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWIITRSFAKSDVSKWMKALLDRAHSVEPGWKVSGFLIDDAATEIDPITDIFCCPVLFSLWRIRRSWLKNVVRKCSSIEVQREMFKRLGKLVHSIWDGVDTSVVLEDFIRDFIDQTAFMEYFKGCWVPKIEMWLSAMRAFPLASQEASGAIEAYHMKLKAKLFDDSHLGAFQRVDWLVHKLTTELHSTYWLDRYADESDSFQNVKEEYISSTSWHRALQIPDSSVSLDEENHLFAKVLSQKDSSVSHIVWNPGSEFSFCDCSWSLQGNLCKHVIKVNMICENRPSYKPSMSFQSFEEILMNMWKLPMDDSVALDVSMAWTHQILDEIQKLVELNSSNDISSVVNKLPLKWASGKGRTSCRKPSSTVAFPLESNIVKKAMPKKNRKRKRLSGGLWSKKHRLQLARGMVRICPHKSIARVLPLRSFRIYQESLQEYLLRPTQQAMATMNSSVLACNYAISGAGSADLSSKINAAPSVASPGVVGYKLPAIRAQQARVPEAKNDGRRSALLYLGATLFAAAAAASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKV 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8103068 8109074 - CmoCh03G010840.1 Cmo03g01084 378547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01084 910 Gene3D - 854 910 IPR044907 -
Cmo03g01084 910 ProSiteProfiles Zinc finger SWIM-type profile. 569 606 IPR007527 GO:0008270
Cmo03g01084 910 PANTHER ZINC ION BINDING PROTEIN 1 715 - -
Cmo03g01084 910 PANTHER OS09G0309100 PROTEIN 1 715 - -
Cmo03g01084 910 Pfam Photosystem I reaction centre subunit N (PSAN or PSI-N) 811 909 IPR008796 GO:0009522|GO:0015979
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01084 Cmo07g00833 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01084 Cmo-Chr3:8103068 Cmo09g00490 Cmo-Chr9:2240258 0 dispersed
Cmo07g00832 Cmo-Chr7:3889160 Cmo03g01084 Cmo-Chr3:8103068 4.11E-31 transposed
Cmo03g01084 Cmo-Chr3:8103068 Cmo07g00831 Cmo-Chr7:3887517 8.84E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01084 - - csv:101204643 1397.1