Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo03g01093 | ATGAGGGAAGAACACTCCAATTGGTTCTCGAGATGGGAAGAGGAGCTTCCATCTCCGGATGAATTGATGCCTCTCTCTCAAACCCTAATAACTCCCGATCTAGCTTTGGCTTTTGATATTCAGAATTCCAGTAATACCAGTCCGCCCTTGCCCTGCCCATCTCCGCCGCTTTCGAATCCTCTCCCTGGCTCCGGCAATGGAATTGCGCCGCCCAACTCGGCGGATTTCGGTGATTCCGCCGATTTGGGTTCTGTTGCTGCTAGCGACGAACCGGCTCGAACCCTCAAGCGGCCGCGTCTCGTTTGGACACCTCAACTCCATAAGCGATTCGTTGATGCTGTTGCTCATTTGGGTATCAAAAATGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGCTTGACCAGAGAGAACGTTGCTAGTCATTTGCAGAAGTACCGCCTCTATCTCAAACGGATGCAGGGCTTATCCAGCGGCGGCGGTGGTGGTGGTGGTGGTGGTGGGTTGGTTGCTTCCTCGGACCCCACTGACCATTTGTTCGCTAGCTCCCCAGTTCCACCCCATTTGCTTCACTCAGCTCGCTCCACTTCAGACCATTTCTTGCCCTTTGTTCCAATGGCCACTTTACAGCAACACCACCATCACCAGCAGCATATGGCTGCTGCTGCTGCTGCTGCTGTCGCCGGGCATCCACAGCTCCAGCCGTCATATCATCGACAAGTCGGGCATTTCGGGTCGCCCCCGAATGGCCAGTTTGAGCATCCATTTTTAGCTAGACAATCCCAACCAGTCCATAGAATGGGTGCACCAGTCCATAACTCAATTCCTAATTACATTGAGGATTTGGAATCAGCCAATGCCAATGGTGGAAGAAAAGTTCTCACCTTATTCCCTACTGGGGATGATTGA | 915 | 52.57 | MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNSSNTSPPLPCPSPPLSNPLPGSGNGIAPPNSADFGDSADLGSVAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGGGGGGGGLVASSDPTDHLFASSPVPPHLLHSARSTSDHFLPFVPMATLQQHHHHQQHMAAAAAAAVAGHPQLQPSYHRQVGHFGSPPNGQFEHPFLARQSQPVHRMGAPVHNSIPNYIEDLESANANGGRKVLTLFPTGDD | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 8665321 | 8666235 | + | CmoCh03G010930.1 | Cmo03g01093 | 378556 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo03g01093 | 304 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cmo03g01093 | 304 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 102 | 153 | IPR017930 | - | |
Cmo03g01093 | 304 | Pfam | Myb-like DNA-binding domain | 101 | 149 | IPR001005 | - | |
Cmo03g01093 | 304 | Gene3D | - | 94 | 156 | - | - | |
Cmo03g01093 | 304 | PANTHER | HOMEODOMAIN-LIKE PROTEIN-RELATED | 1 | 304 | - | - | |
Cmo03g01093 | 304 | SUPERFAMILY | Homeodomain-like | 94 | 154 | IPR009057 | - | |
Cmo03g01093 | 304 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 98 | 150 | IPR006447 | GO:0003677 | |
Cmo03g01093 | 304 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 1 | 304 | IPR044841 | GO:0003700|GO:0006355 | |
Cmo03g01093 | 304 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Cmo03g01093 | 304 | MobiDBLite | consensus disorder prediction | 41 | 90 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g00786 | Cmo-Chr2:4861785 | Cmo03g01093 | Cmo-Chr3:8665321 | 1.23E-35 | dispersed | |
Cmo03g01093 | Cmo-Chr3:8665321 | Cmo07g01147 | Cmo-Chr7:6151823 | 7.07E-158 | dispersed | |
Cmo03g01093 | Cmo-Chr3:8665321 | Cmo06g00028 | Cmo-Chr6:191731 | 1.84E-120 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9454 | PF00249 | Myb_DNA-binding | 2.20E-08 | CL0123 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo03g01093 | - | - | cmax:111467241 | 521.546 |