Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01093 ATGAGGGAAGAACACTCCAATTGGTTCTCGAGATGGGAAGAGGAGCTTCCATCTCCGGATGAATTGATGCCTCTCTCTCAAACCCTAATAACTCCCGATCTAGCTTTGGCTTTTGATATTCAGAATTCCAGTAATACCAGTCCGCCCTTGCCCTGCCCATCTCCGCCGCTTTCGAATCCTCTCCCTGGCTCCGGCAATGGAATTGCGCCGCCCAACTCGGCGGATTTCGGTGATTCCGCCGATTTGGGTTCTGTTGCTGCTAGCGACGAACCGGCTCGAACCCTCAAGCGGCCGCGTCTCGTTTGGACACCTCAACTCCATAAGCGATTCGTTGATGCTGTTGCTCATTTGGGTATCAAAAATGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGCTTGACCAGAGAGAACGTTGCTAGTCATTTGCAGAAGTACCGCCTCTATCTCAAACGGATGCAGGGCTTATCCAGCGGCGGCGGTGGTGGTGGTGGTGGTGGTGGGTTGGTTGCTTCCTCGGACCCCACTGACCATTTGTTCGCTAGCTCCCCAGTTCCACCCCATTTGCTTCACTCAGCTCGCTCCACTTCAGACCATTTCTTGCCCTTTGTTCCAATGGCCACTTTACAGCAACACCACCATCACCAGCAGCATATGGCTGCTGCTGCTGCTGCTGCTGTCGCCGGGCATCCACAGCTCCAGCCGTCATATCATCGACAAGTCGGGCATTTCGGGTCGCCCCCGAATGGCCAGTTTGAGCATCCATTTTTAGCTAGACAATCCCAACCAGTCCATAGAATGGGTGCACCAGTCCATAACTCAATTCCTAATTACATTGAGGATTTGGAATCAGCCAATGCCAATGGTGGAAGAAAAGTTCTCACCTTATTCCCTACTGGGGATGATTGA 915 52.57 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNSSNTSPPLPCPSPPLSNPLPGSGNGIAPPNSADFGDSADLGSVAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGGGGGGGGLVASSDPTDHLFASSPVPPHLLHSARSTSDHFLPFVPMATLQQHHHHQQHMAAAAAAAVAGHPQLQPSYHRQVGHFGSPPNGQFEHPFLARQSQPVHRMGAPVHNSIPNYIEDLESANANGGRKVLTLFPTGDD 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8665321 8666235 + CmoCh03G010930.1 Cmo03g01093 378556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01093 304 MobiDBLite consensus disorder prediction 1 24 - -
Cmo03g01093 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Cmo03g01093 304 Pfam Myb-like DNA-binding domain 101 149 IPR001005 -
Cmo03g01093 304 Gene3D - 94 156 - -
Cmo03g01093 304 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 304 - -
Cmo03g01093 304 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
Cmo03g01093 304 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677
Cmo03g01093 304 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 304 IPR044841 GO:0003700|GO:0006355
Cmo03g01093 304 MobiDBLite consensus disorder prediction 1 18 - -
Cmo03g01093 304 MobiDBLite consensus disorder prediction 41 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00786 Cmo-Chr2:4861785 Cmo03g01093 Cmo-Chr3:8665321 1.23E-35 dispersed
Cmo03g01093 Cmo-Chr3:8665321 Cmo07g01147 Cmo-Chr7:6151823 7.07E-158 dispersed
Cmo03g01093 Cmo-Chr3:8665321 Cmo06g00028 Cmo-Chr6:191731 1.84E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9454 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01093 - - cmax:111467241 521.546