Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01093 ATGAGGGAAGAACACTCCAATTGGTTCTCGAGATGGGAAGAGGAGCTTCCATCTCCGGATGAATTGATGCCTCTCTCTCAAACCCTAATAACTCCCGATCTAGCTTTGGCTTTTGATATTCAGAATTCCAGTAATACCAGTCCGCCCTTGCCCTGCCCATCTCCGCCGCTTTCGAATCCTCTCCCTGGCTCCGGCAATGGAATTGCGCCGCCCAACTCGGCGGATTTCGGTGATTCCGCCGATTTGGGTTCTGTTGCTGCTAGCGACGAACCGGCTCGAACCCTCAAGCGGCCGCGTCTCGTTTGGACACCTCAACTCCATAAGCGATTCGTTGATGCTGTTGCTCATTTGGGTATCAAAAATGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGATGGCTTGACCAGAGAGAACGTTGCTAGTCATTTGCAGAAGTACCGCCTCTATCTCAAACGGATGCAGGGCTTATCCAGCGGCGGCGGTGGTGGTGGTGGTGGTGGTGGGTTGGTTGCTTCCTCGGACCCCACTGACCATTTGTTCGCTAGCTCCCCAGTTCCACCCCATTTGCTTCACTCAGCTCGCTCCACTTCAGACCATTTCTTGCCCTTTGTTCCAATGGCCACTTTACAGCAACACCACCATCACCAGCAGCATATGGCTGCTGCTGCTGCTGCTGCTGTCGCCGGGCATCCACAGCTCCAGCCGTCATATCATCGACAAGTCGGGCATTTCGGGTCGCCCCCGAATGGCCAGTTTGAGCATCCATTTTTAGCTAGACAATCCCAACCAGTCCATAGAATGGGTGCACCAGTCCATAACTCAATTCCTAATTACATTGAGGATTTGGAATCAGCCAATGCCAATGGTGGAAGAAAAGTTCTCACCTTATTCCCTACTGGGGATGATTGA 915 52.57 MREEHSNWFSRWEEELPSPDELMPLSQTLITPDLALAFDIQNSSNTSPPLPCPSPPLSNPLPGSGNGIAPPNSADFGDSADLGSVAASDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGGGGGGGGLVASSDPTDHLFASSPVPPHLLHSARSTSDHFLPFVPMATLQQHHHHQQHMAAAAAAAVAGHPQLQPSYHRQVGHFGSPPNGQFEHPFLARQSQPVHRMGAPVHNSIPNYIEDLESANANGGRKVLTLFPTGDD 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8665321 8666235 + CmoCh03G010930.1 Cmo03g01093 378556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01093 304 MobiDBLite consensus disorder prediction 1 24 - -
Cmo03g01093 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 153 IPR017930 -
Cmo03g01093 304 Pfam Myb-like DNA-binding domain 101 149 IPR001005 -
Cmo03g01093 304 Gene3D - 94 156 - -
Cmo03g01093 304 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 304 - -
Cmo03g01093 304 SUPERFAMILY Homeodomain-like 94 154 IPR009057 -
Cmo03g01093 304 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677
Cmo03g01093 304 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 304 IPR044841 GO:0003700|GO:0006355
Cmo03g01093 304 MobiDBLite consensus disorder prediction 1 18 - -
Cmo03g01093 304 MobiDBLite consensus disorder prediction 41 90 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01093 - - - cmax:111467241 521.546
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00786 Cmo-Chr2:4861785 Cmo03g01093 Cmo-Chr3:8665321 1.23E-35 dispersed
Cmo03g01093 Cmo-Chr3:8665321 Cmo07g01147 Cmo-Chr7:6151823 7.07E-158 dispersed
Cmo03g01093 Cmo-Chr3:8665321 Cmo06g00028 Cmo-Chr6:191731 1.84E-120 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo06g01253 CST 12 268 G2-like Transcription Factor Family AT3G24120 62.2 1.8e-76 283.5
Cmo14g01946 CST 1 257 G2-like Transcription Factor Family AT3G24120 61.3 8.9e-76 281.2
Cmo20g00312 . 22 194 G2-like Transcription Factor Family AT3G24120 54.6 6.0e-40 162.2
Cmo19g01150 . 18 168 G2-like Transcription Factor Family AT3G24120 58.3 7.9e-40 161.8
Cmo02g01694 . 4 151 G2-like Transcription Factor Family AT3G24120 54.3 1.1e-38 157.9
Cmo19g00220 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 1.3e-37 154.5
Cmo07g00367 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.8e-37 153.3
Cmo19g00231 CCT,CST 152 354 G2-like Transcription Factor Family AT5G16560 52.2 6.7e-42 169.1
Cmo09g00190 CCT 1 165 G2-like Transcription Factor Family AT5G42630 56.9 1.3e-39 160.6
Cmo12g00449 CCT,CST 4 143 G2-like Transcription Factor Family AT5G42630 58.3 9.4e-38 154.5
Cmo04g02159 . 20 256 G2-like Transcription Factor Family AT1G25550 52.2 1.1e-48 191.0
Cmo03g01093 . 1 304 G2-like Transcription Factor Family AT5G05090 54.3 5.7e-74 275.0
Cmo07g01147 . 1 299 G2-like Transcription Factor Family AT5G05090 54.5 1.4e-72 270.4
Cmo14g00500 . 1 277 G2-like Transcription Factor Family AT5G05090 58.6 1.7e-70 263.5
Cmo06g00028 . 1 285 G2-like Transcription Factor Family AT5G05090 52.9 5.0e-70 261.9
Cmo06g01253 CST 12 316 G2-like Transcription Factor Family AT4G13640 56.9 9.5e-62 234.6
Cmo14g01946 CST 1 293 G2-like Transcription Factor Family AT4G13640 57.6 5.2e-60 228.8
Cmo02g01770 CST 87 356 G2-like Transcription Factor Family AT3G04450 52.4 7.3e-57 218.8
Cmo06g01253 CST 12 268 G2-like Transcription Factor Family AT3G24120 62.2 1.8e-76 283.5
Cmo14g01946 CST 1 257 G2-like Transcription Factor Family AT3G24120 61.3 8.9e-76 281.2
Cmo20g00312 . 22 194 G2-like Transcription Factor Family AT3G24120 54.6 6.0e-40 162.2
Cmo19g01150 . 18 168 G2-like Transcription Factor Family AT3G24120 58.3 7.9e-40 161.8
Cmo02g01694 . 4 151 G2-like Transcription Factor Family AT3G24120 54.3 1.1e-38 157.9
Cmo19g00220 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 1.3e-37 154.5
Cmo07g00367 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.8e-37 153.3
Cmo05g00868 . 7 200 G2-like Transcription Factor Family AT1G69580 50.5 1.2e-36 151.4
Cmo19g01150 . 1 379 G2-like Transcription Factor Family AT1G79430 53.6 3.0e-86 316.2
Cmo10g01273 . 1 376 G2-like Transcription Factor Family AT1G79430 50.9 6.7e-78 288.5
Cmo20g00312 . 1 366 G2-like Transcription Factor Family AT1G79430 53.0 1.5e-77 287.3
Cmo06g01253 CST 26 204 G2-like Transcription Factor Family AT1G79430 55.7 2.1e-39 160.6
Cmo14g01946 CST 29 193 G2-like Transcription Factor Family AT1G79430 59.4 7.5e-37 152.1
Cmo03g00639 . 84 327 G2-like Transcription Factor Family AT2G01060 59.7 1.7e-53 206.8
Cmo07g00368 . 66 323 G2-like Transcription Factor Family AT2G01060 56.9 1.9e-52 203.4
Cmo07g01147 . 1 299 G2-like Transcription Factor Family AT3G10760 62.5 2.7e-89 326.2
Cmo03g01093 . 1 304 G2-like Transcription Factor Family AT3G10760 60.2 7.4e-87 318.2
Cmo06g00028 . 1 285 G2-like Transcription Factor Family AT3G10760 59.2 1.1e-85 314.3
Cmo14g00500 . 1 277 G2-like Transcription Factor Family AT3G10760 58.6 1.5e-79 293.9
Cmo07g01147 . 1 204 G2-like Transcription Factor Family AT2G40970 62.0 7.5e-60 228.0
Cmo14g00500 . 1 193 G2-like Transcription Factor Family AT2G40970 59.4 1.4e-58 223.8
Cmo03g01093 . 1 204 G2-like Transcription Factor Family AT2G40970 58.5 5.4e-58 221.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001839 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9454 PF00249 Myb_DNA-binding 2.20E-08 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g01093 Cmo_Chr03 FPKM 10.329803 11.347087 8.194715 8.160128 11.43815 10.191738 12.226534 9.944895 8.149744 9.131356