Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo03g01106 | ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACGATCCTCTTAGCTTCCTATTACTGCACCAGAAACGGCTTATCGTCGACGTCCGTGGTCGAGAGAAACAGCAATCGCTCGCCGCCGCAGGCGGAGGGAGAAGCCGCCGCAGTCGTCGATGTCGGACTCGATCAGGAAACGATTAAGAGTTATCCGAAATTGCTGTATTCGGAGGCGAAGCTTCTGAAGAATGATTCCTCTGCCTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGAATGTTCTTAGGGCTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCATCGATCCGTGGCTGAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCAGAGCAAGTTCCATTGGCCAGTCGACGGGATTGA | 516 | 54.46 | MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNRSPPQAEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD | 171 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 8935077 | 8935592 | - | CmoCh03G011060.1 | Cmo03g01106 | 378569 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo03g01106 | 171 | ProSiteProfiles | Zinc finger RING-type profile. | 106 | 148 | IPR001841 | - | |
Cmo03g01106 | 171 | SUPERFAMILY | RING/U-box | 82 | 153 | - | - | |
Cmo03g01106 | 171 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 170 | IPR045899 | - | |
Cmo03g01106 | 171 | PANTHER | RING-H2 FINGER PROTEIN ATL71-RELATED | 1 | 170 | - | - | |
Cmo03g01106 | 171 | SMART | ring_2 | 106 | 147 | IPR001841 | - | |
Cmo03g01106 | 171 | CDD | RING-H2_PA-TM-RING | 105 | 148 | - | - | |
Cmo03g01106 | 171 | Pfam | Ring finger domain | 106 | 148 | IPR001841 | - | |
Cmo03g01106 | 171 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 152 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g01106 | Cmo-Chr3:8935077 | Cmo05g00490 | Cmo-Chr5:2312974 | 7.45E-38 | dispersed | |
Cmo14g00369 | Cmo-Chr14:1709505 | Cmo03g01106 | Cmo-Chr3:8935077 | 3.58E-54 | wgd | |
Cmo03g01106 | Cmo-Chr3:8935077 | Cmo07g00849 | Cmo-Chr7:4015530 | 5.51E-75 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo03g01106 | - | - | csv:101218618 | 271.552 |