Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01106 ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCAAACAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCGTTAGGGCTTTTGATTCTCATCACTACGATCCTCTTAGCTTCCTATTACTGCACCAGAAACGGCTTATCGTCGACGTCCGTGGTCGAGAGAAACAGCAATCGCTCGCCGCCGCAGGCGGAGGGAGAAGCCGCCGCAGTCGTCGATGTCGGACTCGATCAGGAAACGATTAAGAGTTATCCGAAATTGCTGTATTCGGAGGCGAAGCTTCTGAAGAATGATTCCTCTGCCTCTTGCTGTTCAATCTGTTTGGCCGATTACAAGAACTCGAATGTTCTTAGGGCTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCATCGATCCGTGGCTGAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCAGAGCAAGTTCCATTGGCCAGTCGACGGGATTGA 516 54.46 MNNGTADSGGFLSSNNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSTSVVERNSNRSPPQAEGEAAAVVDVGLDQETIKSYPKLLYSEAKLLKNDSSASCCSICLADYKNSNVLRALPDCGHLFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8935077 8935592 - CmoCh03G011060.1 Cmo03g01106 378569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01106 171 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Cmo03g01106 171 SUPERFAMILY RING/U-box 82 153 - -
Cmo03g01106 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 170 IPR045899 -
Cmo03g01106 171 PANTHER RING-H2 FINGER PROTEIN ATL71-RELATED 1 170 - -
Cmo03g01106 171 SMART ring_2 106 147 IPR001841 -
Cmo03g01106 171 CDD RING-H2_PA-TM-RING 105 148 - -
Cmo03g01106 171 Pfam Ring finger domain 106 148 IPR001841 -
Cmo03g01106 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 152 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01106 Cmo-Chr3:8935077 Cmo05g00490 Cmo-Chr5:2312974 7.45E-38 dispersed
Cmo14g00369 Cmo-Chr14:1709505 Cmo03g01106 Cmo-Chr3:8935077 3.58E-54 wgd
Cmo03g01106 Cmo-Chr3:8935077 Cmo07g00849 Cmo-Chr7:4015530 5.51E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01106 - - csv:101218618 271.552