Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01117 ATGCGTGGCGGCTCTCGAGCTCCGAACAGGTCGGAGCCACTGCCCCACTCGCAAACTGCTCAGATCCTGCCGCCTCTTAAGCGTCAGTTAGCTTTCGAGTCGAATAAGCCGCTGCGTGCTTCTTCCAATTCTTTTGATCAAGAACCTGATTCCATCGCTGTTAAACCTCTCAAACCAAAGCAGACAGGTGTTATGTATACCAACGTGGTTGAATCAAATGACTGCATTCAAGATCAGGGATTTTCTAAAGATTCTCTAAGTTCTGTTCAGACACCCGTATCTGCAAAAGGAGGAAGGATGTACAATAAGTCAAAAACTTCAAGGAGAATGACATCTGGGACTCAAACACCTATCTCAGACACTAGCATTTATTCTCCTCTTACTCCAGCTGGAAACTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTAAACAAAGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAGGGATTCAATACACAAGTTCCAGGAAATGTGGATAGTGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAAATGATAAGATAAGAACATTGCAGGAAAGACTGAGGAATCTGAGTGAAGACGAAAATCTCCAAAAATGGCTCTTTGTGACAGAAGAAGACATTAAAAGCTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCGCATGGAACCACATTGGAAGTTCCTGATCCTGATGAAGCTGTTGATTATCCACAGAGAAGATATAGGATAGTTCTTAGGAGTACGATGGGTCCTATCGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGGTGAATGTGGTCAAGCCACCCAGGAACTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTAGCAACAGAAGCCATCAGGGAGAGTAGTAGAGACGAAATAGAGCCTCAAGCTCACCTGTCCCAATACAGCAGTAGCTGTGATGTGAATGGTTCAAATGAGTTTCCTGGGGGAATGATGAAGATTATTCCTTCAGAATTTGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATTCAGATATTGCATGGGATGAATCGCATATGGTTTCTCAGGACTTTTTGATATCTGATGTCAGTGCCCAAAGGCCAAGACCCGGAAGCCCACATTCGGAGACAGTCGAAGCACCATCTGATGTTAACTCAAGACAGAGATTTTCCAAGCATGGTATAGAATATAAATTGCGAGGACTAGTCGTACGCGGTGTGCAGAGGAAATAG 1446 41.84 MRGGSRAPNRSEPLPHSQTAQILPPLKRQLAFESNKPLRASSNSFDQEPDSIAVKPLKPKQTGVMYTNVVESNDCIQDQGFSKDSLSSVQTPVSAKGGRMYNKSKTSRRMTSGTQTPISDTSIYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNTQVPGNVDSDTSMLQVDVENLSFEERRLNDKIRTLQERLRNLSEDENLQKWLFVTEEDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEVNVVKPPRNFLHASSSGSNEHLATEAIRESSRDEIEPQAHLSQYSSSCDVNGSNEFPGGMMKIIPSEFDNDADYWLLSDAEVSITDMWRTDSDIAWDESHMVSQDFLISDVSAQRPRPGSPHSETVEAPSDVNSRQRFSKHGIEYKLRGLVVRGVQRK 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8970606 8976527 + CmoCh03G011170.1 Cmo03g01117 378580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01117 481 MobiDBLite consensus disorder prediction 435 459 - -
Cmo03g01117 481 Pfam E2F transcription factor CC-MB domain 215 315 IPR032198 GO:0046983
Cmo03g01117 481 Pfam E2F/DP family winged-helix DNA-binding domain 136 199 IPR003316 GO:0005667|GO:0006355
Cmo03g01117 481 Gene3D - 128 202 IPR036388 -
Cmo03g01117 481 Gene3D - 206 316 - -
Cmo03g01117 481 MobiDBLite consensus disorder prediction 1 24 - -
Cmo03g01117 481 SUPERFAMILY E2F-DP heterodimerization region 213 316 IPR037241 -
Cmo03g01117 481 PANTHER TRANSCRIPTION FACTOR E2F 26 451 IPR015633 GO:0000978|GO:0006357
Cmo03g01117 481 MobiDBLite consensus disorder prediction 87 123 - -
Cmo03g01117 481 SMART E2F_TDP_2 134 199 IPR003316 GO:0005667|GO:0006355
Cmo03g01117 481 Coils Coil 219 246 - -
Cmo03g01117 481 CDD E2F_DD 215 316 IPR032198 GO:0046983
Cmo03g01117 481 PANTHER TRANSCRIPTION FACTOR E2FB 26 451 - -
Cmo03g01117 481 SUPERFAMILY Winged helix DNA-binding domain 134 197 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01117 K06620 E2F3; transcription factor E2F3 - csv:101212480 709.523
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo03g01117 Cmo07g00858 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01117 Cmo-Chr3:8970606 Cmo20g00168 Cmo-Chr20:850643 2.03E-77 dispersed
Cmo02g01350 Cmo-Chr2:8036553 Cmo03g01117 Cmo-Chr3:8970606 3.36E-146 wgd
Cmo03g01117 Cmo-Chr3:8970606 Cmo07g00858 Cmo-Chr7:4049258 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g917 . Blo12g00527 . Bda03g00671 . . . . . . . Cma07g00828 Car03g01015 Car07g00815 . Cpe10g00310 . Bhi03g01787 Tan03g1249 . . . . . Cla04g01021 Cam04g1063 Cec04g1183 Cco04g1250 Clacu04g1090 Cmu04g1074 Cre04g1133 Cone3ag0151 Cone10ag0135 . . Lsi01g01191 Csa06g02714 Chy08g00971 . . . . . Bpe04g00633 . . Bma04g00537 . Cmo03g01117 Cmo07g00858 . . . . . Cpe19g00497 . . . . . . . . . . . . . . . . . Cme08g01161
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo18g00114 CCT,CST 18 393 E2F-DP Transcription Factor Family AT3G48160 54.6 2.3e-103 373.2
Cmo04g00407 . 83 286 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-59 227.3
Cmo16g00284 . 121 324 E2F-DP Transcription Factor Family AT5G02470 54.6 9.7e-59 224.6
Cmo03g01117 CST 11 460 E2F-DP Transcription Factor Family AT2G36010 52.3 1.6e-111 400.6
Cmo07g00858 CST 353 796 E2F-DP Transcription Factor Family AT2G36010 51.6 8.4e-108 388.3
Cmo02g01350 CST 21 454 E2F-DP Transcription Factor Family AT2G36010 51.0 7.9e-106 381.7
Cmo20g00168 CST 21 261 E2F-DP Transcription Factor Family AT2G36010 56.1 1.7e-63 241.1
Cmo02g01350 CST 24 461 E2F-DP Transcription Factor Family AT5G22220 52.5 7.3e-101 365.2
Cmo03g01117 CST 50 450 E2F-DP Transcription Factor Family AT5G22220 50.1 1.4e-88 324.3
Cmo20g00168 CST 10 261 E2F-DP Transcription Factor Family AT5G22220 60.2 8.8e-62 235.3
Cmo12g00363 CST 153 409 E2F-DP Transcription Factor Family AT1G47870 52.9 3.8e-66 249.6
Cmo05g00304 CST 155 415 E2F-DP Transcription Factor Family AT1G47870 52.7 2.7e-64 243.4
Cmo04g00407 . 83 286 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-59 227.3
Cmo16g00284 . 121 324 E2F-DP Transcription Factor Family AT5G02470 54.6 9.7e-59 224.6
Cmo02g01350 CST 24 461 E2F-DP Transcription Factor Family AT5G22220 52.5 7.3e-101 365.2
Cmo03g01117 CST 50 450 E2F-DP Transcription Factor Family AT5G22220 50.1 1.4e-88 324.3
Cmo20g00168 CST 10 261 E2F-DP Transcription Factor Family AT5G22220 60.2 8.8e-62 235.3
Cmo03g01117 CST 11 460 E2F-DP Transcription Factor Family AT2G36010 52.3 1.6e-111 400.6
Cmo07g00858 CST 353 796 E2F-DP Transcription Factor Family AT2G36010 51.6 8.4e-108 388.3
Cmo02g01350 CST 21 454 E2F-DP Transcription Factor Family AT2G36010 51.0 7.9e-106 381.7
Cmo20g00168 CST 21 261 E2F-DP Transcription Factor Family AT2G36010 56.1 1.7e-63 241.1
Cmo12g00363 CST 153 409 E2F-DP Transcription Factor Family AT1G47870 52.9 3.8e-66 249.6
Cmo05g00304 CST 155 415 E2F-DP Transcription Factor Family AT1G47870 52.7 2.7e-64 243.4
Cmo18g00114 CCT,CST 18 393 E2F-DP Transcription Factor Family AT3G48160 54.6 2.3e-103 373.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005036 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9456 PF16421 E2F_CC-MB 2.30E-32 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g01117 Cmo_Chr03 FPKM 16.650278 20.119425 26.510149 27.949997 23.548983 21.591282 22.592049 42.438801 41.632679 41.85429