Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01117 ATGCGTGGCGGCTCTCGAGCTCCGAACAGGTCGGAGCCACTGCCCCACTCGCAAACTGCTCAGATCCTGCCGCCTCTTAAGCGTCAGTTAGCTTTCGAGTCGAATAAGCCGCTGCGTGCTTCTTCCAATTCTTTTGATCAAGAACCTGATTCCATCGCTGTTAAACCTCTCAAACCAAAGCAGACAGGTGTTATGTATACCAACGTGGTTGAATCAAATGACTGCATTCAAGATCAGGGATTTTCTAAAGATTCTCTAAGTTCTGTTCAGACACCCGTATCTGCAAAAGGAGGAAGGATGTACAATAAGTCAAAAACTTCAAGGAGAATGACATCTGGGACTCAAACACCTATCTCAGACACTAGCATTTATTCTCCTCTTACTCCAGCTGGAAACTGTCGATATGACAGTTCTTTAGGTCTTCTGACAAAAAAATTCATCAATTTAATTAAGCAAGCAAGGGATGGCATTCTTGACTTAAACAAAGCTGCAGAAACTTTGCAGGTGCAGAAAAGGAGAATATATGACATAACAAATGTTTTGGAAGGCATAGGTCTCATAGAAAAGAAGCTGAAAAACATAATATATTGGAAGGGATTCAATACACAAGTTCCAGGAAATGTGGATAGTGATACTTCTATGTTGCAGGTGGATGTTGAAAACCTTTCTTTTGAAGAGCGTAGATTAAATGATAAGATAAGAACATTGCAGGAAAGACTGAGGAATCTGAGTGAAGACGAAAATCTCCAAAAATGGCTCTTTGTGACAGAAGAAGACATTAAAAGCTTGCCTTGCTTTCAGAATGAAACGCTGATAGCAATTAAAGCTCCGCATGGAACCACATTGGAAGTTCCTGATCCTGATGAAGCTGTTGATTATCCACAGAGAAGATATAGGATAGTTCTTAGGAGTACGATGGGTCCTATCGATGTATATCTTGTCAGTCAATTTGAGGAAAAGTTTGAGGAGGTGAATGTGGTCAAGCCACCCAGGAACTTCCTACATGCTTCCAGTTCAGGATCAAACGAACATCTAGCAACAGAAGCCATCAGGGAGAGTAGTAGAGACGAAATAGAGCCTCAAGCTCACCTGTCCCAATACAGCAGTAGCTGTGATGTGAATGGTTCAAATGAGTTTCCTGGGGGAATGATGAAGATTATTCCTTCAGAATTTGATAATGATGCAGATTACTGGCTGTTATCAGATGCTGAAGTTAGCATTACAGATATGTGGAGAACAGATTCAGATATTGCATGGGATGAATCGCATATGGTTTCTCAGGACTTTTTGATATCTGATGTCAGTGCCCAAAGGCCAAGACCCGGAAGCCCACATTCGGAGACAGTCGAAGCACCATCTGATGTTAACTCAAGACAGAGATTTTCCAAGCATGGTATAGAATATAAATTGCGAGGACTAGTCGTACGCGGTGTGCAGAGGAAATAG 1446 41.84 MRGGSRAPNRSEPLPHSQTAQILPPLKRQLAFESNKPLRASSNSFDQEPDSIAVKPLKPKQTGVMYTNVVESNDCIQDQGFSKDSLSSVQTPVSAKGGRMYNKSKTSRRMTSGTQTPISDTSIYSPLTPAGNCRYDSSLGLLTKKFINLIKQARDGILDLNKAAETLQVQKRRIYDITNVLEGIGLIEKKLKNIIYWKGFNTQVPGNVDSDTSMLQVDVENLSFEERRLNDKIRTLQERLRNLSEDENLQKWLFVTEEDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEVNVVKPPRNFLHASSSGSNEHLATEAIRESSRDEIEPQAHLSQYSSSCDVNGSNEFPGGMMKIIPSEFDNDADYWLLSDAEVSITDMWRTDSDIAWDESHMVSQDFLISDVSAQRPRPGSPHSETVEAPSDVNSRQRFSKHGIEYKLRGLVVRGVQRK 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8970606 8976527 + CmoCh03G011170.1 Cmo03g01117 378580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01117 481 MobiDBLite consensus disorder prediction 435 459 - -
Cmo03g01117 481 Pfam E2F transcription factor CC-MB domain 215 315 IPR032198 GO:0046983
Cmo03g01117 481 Pfam E2F/DP family winged-helix DNA-binding domain 136 199 IPR003316 GO:0005667|GO:0006355
Cmo03g01117 481 Gene3D - 128 202 IPR036388 -
Cmo03g01117 481 Gene3D - 206 316 - -
Cmo03g01117 481 MobiDBLite consensus disorder prediction 1 24 - -
Cmo03g01117 481 SUPERFAMILY E2F-DP heterodimerization region 213 316 IPR037241 -
Cmo03g01117 481 PANTHER TRANSCRIPTION FACTOR E2F 26 451 IPR015633 GO:0000978|GO:0006357
Cmo03g01117 481 MobiDBLite consensus disorder prediction 87 123 - -
Cmo03g01117 481 SMART E2F_TDP_2 134 199 IPR003316 GO:0005667|GO:0006355
Cmo03g01117 481 Coils Coil 219 246 - -
Cmo03g01117 481 CDD E2F_DD 215 316 IPR032198 GO:0046983
Cmo03g01117 481 PANTHER TRANSCRIPTION FACTOR E2FB 26 451 - -
Cmo03g01117 481 SUPERFAMILY Winged helix DNA-binding domain 134 197 IPR036390 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01117 Cmo07g00858 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01117 Cmo-Chr3:8970606 Cmo20g00168 Cmo-Chr20:850643 2.03E-77 dispersed
Cmo02g01350 Cmo-Chr2:8036553 Cmo03g01117 Cmo-Chr3:8970606 3.36E-146 wgd
Cmo03g01117 Cmo-Chr3:8970606 Cmo07g00858 Cmo-Chr7:4049258 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9456 PF16421 E2F_CC-MB 2.30E-32 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01117 K06620 - csv:101212480 709.523