Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01161 ATGGGAACTGGTACTTGTGAAATTGTTGAAGCAAGGGAAGAAATCAAACCTGTTCAAAGTAAGGTAGGTTCTCATCATTCAGATTTCTTATCAAATAAAGATCGAAAACTTTCTGCATTGAAAATTGGATTCAAAGGATCTCTAGAGGATGATATCAATCAGATTTTTGAGTCAATTAGTATTAAAAATGCATCCAAGAGTTTAGGTCATTCGCAAGTAGAGGTAAATGCACTGAGAAAAAGTACACTAAAGAAGCCGATCACTGTTGGCATACCTCGCTCACCAGGTATTGGTACTTCCGATTCTGGTAGTCTGAAGCAAGCACTTAGGGAACTATGCGTTTCGAAAGCGTCTGAAATGGCTGCTATGAAGAGAGCATCAAAATTGTCTAGCTCTTCAAGAATCTCCGAAGCGGGGCGGATCAAGACATTGTATAATTCAGTTATGGTTGAAGCTACTGAGTCAGGCTCTTCTTCACGCATGGTTGAAATATCTCTGGTTCAAGAGGAAAAGAAATTGAACTTTGAGAAGAGACTTAAGCATGTCCAGGCATCTTCTGTTAAATCTCCGGTTGAAAGTGCTCGTTCCTTTCAGTTGCCTATTGCCAAAACAAAAAATTATAGCGAGGTTGTTACTGTGGAACAAAACGTCAATACCACGTCGTCAAGGAAAGTTGGATCTCAAACATTAAGGGCAGAGCTGGAGAAGGAAGAGGAGTCCGTTACCCCACCATCGTTATCTTCCTGCACTATTGGCAAGGTTTTAGAGAAGGAGAAGAAAATTCTTGCTGGAAGCAGGGTAGCAGATAAAGCGGCATCGTCCAAGGCAGGACAAAAAGGTAGGATGCAAACTGCATCTTCGTCTAAGTTGGGTAGTGGCAATAAGGTTACCAAGTTATCTAGAAGTGCCTCCCGTTCGGTTAAACCCGTTATTAGGAACAAGGGGCTGGCTAAGAAGAAAGTCAAACAGGATTTGAGTTCTCCAACATGTAGTTCAAGCACATACAATGCAGTCAATGATGATACGGATCCTAGTAATAGGAAGTTGATATGTGAGCGATGCCACTGTGCATTGAATGGTGCAGCTAAAGACTCAATGAAGGGCTCTGCATCCCAGTTTAGTGGTCTTGGCACTGGTGTAAGCATGACGAATTCGAAATCAGGCATTAGCAAATCAGGCATCTACGGGGATGGCAAGGCTTCTGATGTTAGAGTAAAAAGAAATACAAGGGCACGGGATAAGGGCGAATTTTCTCAAAGCTCAAAAAGTAGTCAAGGTGATTACAGTAGCAGTACGACGAGTATTATAAGTGATGACAGCAATGGTCGTGGATCCAGTAATGGTAACAGACCTCATATGTCGAAAGATGTTAGGTGGGAAGCCATACGCCATGCACAATTGGAGCATGGGGTCCTCAGCTTGCGGCATTTCAATCTTTTAAAGAAGCTTGGTTGTGGTGACATCGGAACCGTGTATCTTGCTGAGCTAACTGGCACTAGTTGCTTATTTGCCATCAAGGTCATGGACAATGAGTTTCTAGCAAGACGGAAGAAAATGCCGAGAGCGCAAACTGAGAGAGAAATACTTAGAATGCTAGATCATCCCTTCCTTCCAACACTTTATGTTCAATTTACTTCTGATAATTTATCATGTCTCGTCATGGAGTATTGTCCTGGAGGAGATCTTCATGTTCTTAGGCAGAAGCAGCTAAGCAGAGTTTTTCCTGAACCCGCAGCAAGATTTTATGTTGCTGAGGTCCTTCTTGCTTTGGAGTACTTGCACATGCTTGGTGTTATTTATCGAGATTTAAAACCCGAGAACATTCTTGTCAGGGAAGATGGTCACATAATGCTTACCGACTTTGACCTGTCGCTTAGGTGCACGGTCAGTCCAACGCTCCTGAAGTCGTCATCCTTCAATGCAGACTTGGTGAAAACCTCAGTTCCAGGTAGAGATTCTAGTTGTGTTGAGCCATTTTGCATTGGACCATCATGTCAAGTCCCATGCTTCAGCCCCAGGTTCTTACCTGCTACATCCAAAGCAAGGAAGTCAAAACCTGACCTCACAACACAGTTCAGGTCATTGCCCCAGCTCATTGCCGAACCCACTGATGCACGATCAAATTCCTTCGTTGGCACTCACGAATATTTGGCTCCCGAGATCATTAAAGGCGAGGGTCATGGAGCTGCAGTCGATTGGTGGACGTTTGGTGTTTTTCTATATGAGCTTCTATATGGTAGAACCCCATTCAAGGGTTCAAACAATGAAGAAACATTAACCAATGTAATCATTCAGAGCCTCAGTTTTCCCGACAGCCCGATCGTTAGTTTCCAAGCAAGAGATCTTATCCGAGGACTGTTGATAAAAGAACCCGAAAATCGATTCAGGACAGAGAAAGGGGCTGCAGAAATCAAACAGCACCCATTCTTCGAGGGGCTAAACTGGGCATTGATCCGTTGTGCAATCCCTCCAGAACTTCCTGACTTATGTGATATGGACATTACAAGCATGATTGCTCAACAAAACAAGTTCAGGTATTTGGAAAGCAAGTCCACTGGAGAACACCTCGAGTTCGAACTGTTTTAG 2586 43.43 MGTGTCEIVEAREEIKPVQSKVGSHHSDFLSNKDRKLSALKIGFKGSLEDDINQIFESISIKNASKSLGHSQVEVNALRKSTLKKPITVGIPRSPGIGTSDSGSLKQALRELCVSKASEMAAMKRASKLSSSSRISEAGRIKTLYNSVMVEATESGSSSRMVEISLVQEEKKLNFEKRLKHVQASSVKSPVESARSFQLPIAKTKNYSEVVTVEQNVNTTSSRKVGSQTLRAELEKEEESVTPPSLSSCTIGKVLEKEKKILAGSRVADKAASSKAGQKGRMQTASSSKLGSGNKVTKLSRSASRSVKPVIRNKGLAKKKVKQDLSSPTCSSSTYNAVNDDTDPSNRKLICERCHCALNGAAKDSMKGSASQFSGLGTGVSMTNSKSGISKSGIYGDGKASDVRVKRNTRARDKGEFSQSSKSSQGDYSSSTTSIISDDSNGRGSSNGNRPHMSKDVRWEAIRHAQLEHGVLSLRHFNLLKKLGCGDIGTVYLAELTGTSCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYVQFTSDNLSCLVMEYCPGGDLHVLRQKQLSRVFPEPAARFYVAEVLLALEYLHMLGVIYRDLKPENILVREDGHIMLTDFDLSLRCTVSPTLLKSSSFNADLVKTSVPGRDSSCVEPFCIGPSCQVPCFSPRFLPATSKARKSKPDLTTQFRSLPQLIAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLTNVIIQSLSFPDSPIVSFQARDLIRGLLIKEPENRFRTEKGAAEIKQHPFFEGLNWALIRCAIPPELPDLCDMDITSMIAQQNKFRYLESKSTGEHLEFELF 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9165435 9168430 + CmoCh03G011610.1 Cmo03g01161 378624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01161 861 Pfam Protein kinase domain 707 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01161 861 Pfam Protein kinase domain 478 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01161 861 MobiDBLite consensus disorder prediction 400 417 - -
Cmo03g01161 861 Gene3D Transferase(Phosphotransferase) domain 1 703 828 - -
Cmo03g01161 861 SUPERFAMILY Protein kinase-like (PK-like) 452 828 IPR011009 -
Cmo03g01161 861 MobiDBLite consensus disorder prediction 219 247 - -
Cmo03g01161 861 Gene3D Phosphorylase Kinase; domain 1 475 556 - -
Cmo03g01161 861 ProSitePatterns Serine/Threonine protein kinases active-site signature. 598 610 IPR008271 GO:0004672|GO:0006468
Cmo03g01161 861 SMART serkin_6 477 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01161 861 ProSiteProfiles Protein kinase domain profile. 477 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01161 861 PANTHER FLIPPASE KINASE 1-RELATED 3 861 - -
Cmo03g01161 861 MobiDBLite consensus disorder prediction 418 452 - -
Cmo03g01161 861 CDD STKc_phototropin_like 475 831 - -
Cmo03g01161 861 MobiDBLite consensus disorder prediction 266 306 - -
Cmo03g01161 861 MobiDBLite consensus disorder prediction 277 306 - -
Cmo03g01161 861 MobiDBLite consensus disorder prediction 377 453 - -
Cmo03g01161 861 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 861 - -
Cmo03g01161 861 Gene3D Transferase(Phosphotransferase) domain 1 557 626 - -
Cmo03g01161 861 MobiDBLite consensus disorder prediction 377 391 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01161 Cmo-Chr3:9165435 Cmo20g00200 Cmo-Chr20:979509 0 dispersed
Cmo02g01274 Cmo-Chr2:7598999 Cmo03g01161 Cmo-Chr3:9165435 3.33E-73 transposed
Cmo08g00236 Cmo-Chr8:1423015 Cmo03g01161 Cmo-Chr3:9165435 7.13E-71 transposed
Cmo02g01378 Cmo-Chr2:8182901 Cmo03g01161 Cmo-Chr3:9165435 0 wgd
Cmo03g01161 Cmo-Chr3:9165435 Cmo07g00896 Cmo-Chr7:4259422 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74206 PF00069 Pkinase 6.50E-36 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01161 - K08286 csv:101210027 1460.28