Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo03g01161 | ATGGGAACTGGTACTTGTGAAATTGTTGAAGCAAGGGAAGAAATCAAACCTGTTCAAAGTAAGGTAGGTTCTCATCATTCAGATTTCTTATCAAATAAAGATCGAAAACTTTCTGCATTGAAAATTGGATTCAAAGGATCTCTAGAGGATGATATCAATCAGATTTTTGAGTCAATTAGTATTAAAAATGCATCCAAGAGTTTAGGTCATTCGCAAGTAGAGGTAAATGCACTGAGAAAAAGTACACTAAAGAAGCCGATCACTGTTGGCATACCTCGCTCACCAGGTATTGGTACTTCCGATTCTGGTAGTCTGAAGCAAGCACTTAGGGAACTATGCGTTTCGAAAGCGTCTGAAATGGCTGCTATGAAGAGAGCATCAAAATTGTCTAGCTCTTCAAGAATCTCCGAAGCGGGGCGGATCAAGACATTGTATAATTCAGTTATGGTTGAAGCTACTGAGTCAGGCTCTTCTTCACGCATGGTTGAAATATCTCTGGTTCAAGAGGAAAAGAAATTGAACTTTGAGAAGAGACTTAAGCATGTCCAGGCATCTTCTGTTAAATCTCCGGTTGAAAGTGCTCGTTCCTTTCAGTTGCCTATTGCCAAAACAAAAAATTATAGCGAGGTTGTTACTGTGGAACAAAACGTCAATACCACGTCGTCAAGGAAAGTTGGATCTCAAACATTAAGGGCAGAGCTGGAGAAGGAAGAGGAGTCCGTTACCCCACCATCGTTATCTTCCTGCACTATTGGCAAGGTTTTAGAGAAGGAGAAGAAAATTCTTGCTGGAAGCAGGGTAGCAGATAAAGCGGCATCGTCCAAGGCAGGACAAAAAGGTAGGATGCAAACTGCATCTTCGTCTAAGTTGGGTAGTGGCAATAAGGTTACCAAGTTATCTAGAAGTGCCTCCCGTTCGGTTAAACCCGTTATTAGGAACAAGGGGCTGGCTAAGAAGAAAGTCAAACAGGATTTGAGTTCTCCAACATGTAGTTCAAGCACATACAATGCAGTCAATGATGATACGGATCCTAGTAATAGGAAGTTGATATGTGAGCGATGCCACTGTGCATTGAATGGTGCAGCTAAAGACTCAATGAAGGGCTCTGCATCCCAGTTTAGTGGTCTTGGCACTGGTGTAAGCATGACGAATTCGAAATCAGGCATTAGCAAATCAGGCATCTACGGGGATGGCAAGGCTTCTGATGTTAGAGTAAAAAGAAATACAAGGGCACGGGATAAGGGCGAATTTTCTCAAAGCTCAAAAAGTAGTCAAGGTGATTACAGTAGCAGTACGACGAGTATTATAAGTGATGACAGCAATGGTCGTGGATCCAGTAATGGTAACAGACCTCATATGTCGAAAGATGTTAGGTGGGAAGCCATACGCCATGCACAATTGGAGCATGGGGTCCTCAGCTTGCGGCATTTCAATCTTTTAAAGAAGCTTGGTTGTGGTGACATCGGAACCGTGTATCTTGCTGAGCTAACTGGCACTAGTTGCTTATTTGCCATCAAGGTCATGGACAATGAGTTTCTAGCAAGACGGAAGAAAATGCCGAGAGCGCAAACTGAGAGAGAAATACTTAGAATGCTAGATCATCCCTTCCTTCCAACACTTTATGTTCAATTTACTTCTGATAATTTATCATGTCTCGTCATGGAGTATTGTCCTGGAGGAGATCTTCATGTTCTTAGGCAGAAGCAGCTAAGCAGAGTTTTTCCTGAACCCGCAGCAAGATTTTATGTTGCTGAGGTCCTTCTTGCTTTGGAGTACTTGCACATGCTTGGTGTTATTTATCGAGATTTAAAACCCGAGAACATTCTTGTCAGGGAAGATGGTCACATAATGCTTACCGACTTTGACCTGTCGCTTAGGTGCACGGTCAGTCCAACGCTCCTGAAGTCGTCATCCTTCAATGCAGACTTGGTGAAAACCTCAGTTCCAGGTAGAGATTCTAGTTGTGTTGAGCCATTTTGCATTGGACCATCATGTCAAGTCCCATGCTTCAGCCCCAGGTTCTTACCTGCTACATCCAAAGCAAGGAAGTCAAAACCTGACCTCACAACACAGTTCAGGTCATTGCCCCAGCTCATTGCCGAACCCACTGATGCACGATCAAATTCCTTCGTTGGCACTCACGAATATTTGGCTCCCGAGATCATTAAAGGCGAGGGTCATGGAGCTGCAGTCGATTGGTGGACGTTTGGTGTTTTTCTATATGAGCTTCTATATGGTAGAACCCCATTCAAGGGTTCAAACAATGAAGAAACATTAACCAATGTAATCATTCAGAGCCTCAGTTTTCCCGACAGCCCGATCGTTAGTTTCCAAGCAAGAGATCTTATCCGAGGACTGTTGATAAAAGAACCCGAAAATCGATTCAGGACAGAGAAAGGGGCTGCAGAAATCAAACAGCACCCATTCTTCGAGGGGCTAAACTGGGCATTGATCCGTTGTGCAATCCCTCCAGAACTTCCTGACTTATGTGATATGGACATTACAAGCATGATTGCTCAACAAAACAAGTTCAGGTATTTGGAAAGCAAGTCCACTGGAGAACACCTCGAGTTCGAACTGTTTTAG | 2586 | 43.43 | MGTGTCEIVEAREEIKPVQSKVGSHHSDFLSNKDRKLSALKIGFKGSLEDDINQIFESISIKNASKSLGHSQVEVNALRKSTLKKPITVGIPRSPGIGTSDSGSLKQALRELCVSKASEMAAMKRASKLSSSSRISEAGRIKTLYNSVMVEATESGSSSRMVEISLVQEEKKLNFEKRLKHVQASSVKSPVESARSFQLPIAKTKNYSEVVTVEQNVNTTSSRKVGSQTLRAELEKEEESVTPPSLSSCTIGKVLEKEKKILAGSRVADKAASSKAGQKGRMQTASSSKLGSGNKVTKLSRSASRSVKPVIRNKGLAKKKVKQDLSSPTCSSSTYNAVNDDTDPSNRKLICERCHCALNGAAKDSMKGSASQFSGLGTGVSMTNSKSGISKSGIYGDGKASDVRVKRNTRARDKGEFSQSSKSSQGDYSSSTTSIISDDSNGRGSSNGNRPHMSKDVRWEAIRHAQLEHGVLSLRHFNLLKKLGCGDIGTVYLAELTGTSCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYVQFTSDNLSCLVMEYCPGGDLHVLRQKQLSRVFPEPAARFYVAEVLLALEYLHMLGVIYRDLKPENILVREDGHIMLTDFDLSLRCTVSPTLLKSSSFNADLVKTSVPGRDSSCVEPFCIGPSCQVPCFSPRFLPATSKARKSKPDLTTQFRSLPQLIAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLTNVIIQSLSFPDSPIVSFQARDLIRGLLIKEPENRFRTEKGAAEIKQHPFFEGLNWALIRCAIPPELPDLCDMDITSMIAQQNKFRYLESKSTGEHLEFELF | 861 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 9165435 | 9168430 | + | CmoCh03G011610.1 | Cmo03g01161 | 378624 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo03g01161 | 861 | Pfam | Protein kinase domain | 707 | 810 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo03g01161 | 861 | Pfam | Protein kinase domain | 478 | 629 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo03g01161 | 861 | MobiDBLite | consensus disorder prediction | 400 | 417 | - | - | |
Cmo03g01161 | 861 | Gene3D | Transferase(Phosphotransferase) domain 1 | 703 | 828 | - | - | |
Cmo03g01161 | 861 | SUPERFAMILY | Protein kinase-like (PK-like) | 452 | 828 | IPR011009 | - | |
Cmo03g01161 | 861 | MobiDBLite | consensus disorder prediction | 219 | 247 | - | - | |
Cmo03g01161 | 861 | Gene3D | Phosphorylase Kinase; domain 1 | 475 | 556 | - | - | |
Cmo03g01161 | 861 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 598 | 610 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo03g01161 | 861 | SMART | serkin_6 | 477 | 810 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo03g01161 | 861 | ProSiteProfiles | Protein kinase domain profile. | 477 | 810 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo03g01161 | 861 | PANTHER | FLIPPASE KINASE 1-RELATED | 3 | 861 | - | - | |
Cmo03g01161 | 861 | MobiDBLite | consensus disorder prediction | 418 | 452 | - | - | |
Cmo03g01161 | 861 | CDD | STKc_phototropin_like | 475 | 831 | - | - | |
Cmo03g01161 | 861 | MobiDBLite | consensus disorder prediction | 266 | 306 | - | - | |
Cmo03g01161 | 861 | MobiDBLite | consensus disorder prediction | 277 | 306 | - | - | |
Cmo03g01161 | 861 | MobiDBLite | consensus disorder prediction | 377 | 453 | - | - | |
Cmo03g01161 | 861 | PANTHER | PROTEIN KINASE SUPERFAMILY PROTEIN | 3 | 861 | - | - | |
Cmo03g01161 | 861 | Gene3D | Transferase(Phosphotransferase) domain 1 | 557 | 626 | - | - | |
Cmo03g01161 | 861 | MobiDBLite | consensus disorder prediction | 377 | 391 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g01161 | Cmo-Chr3:9165435 | Cmo20g00200 | Cmo-Chr20:979509 | 0 | dispersed | |
Cmo02g01274 | Cmo-Chr2:7598999 | Cmo03g01161 | Cmo-Chr3:9165435 | 3.33E-73 | transposed | |
Cmo08g00236 | Cmo-Chr8:1423015 | Cmo03g01161 | Cmo-Chr3:9165435 | 7.13E-71 | transposed | |
Cmo02g01378 | Cmo-Chr2:8182901 | Cmo03g01161 | Cmo-Chr3:9165435 | 0 | wgd | |
Cmo03g01161 | Cmo-Chr3:9165435 | Cmo07g00896 | Cmo-Chr7:4259422 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74206 | PF00069 | Pkinase | 6.50E-36 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo03g01161 | - | K08286 | csv:101210027 | 1460.28 |