Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01170 ATGGAAATGCCTGGAAGGAGGTCAGATTACACGTTTTTAAGTCAAATTCCGGATGAGGAGATTGGAACGGGACCTTCCACCTCGTTTTTCGGGTCAATAGCAGCTGAGGCAAACATTAGCAAGGGGAGAACGGATAGAGTCTTTGATTGGGACGGGAGTGGTGATCACAAGTTAAACACGCAGCCGAATCGAATTGGGAACATGTATTCATGGATTGGTTTGCAGAGGCATTCTAGTGGAAGTAGCTACGATGATAGCTCTCTCTCCAGTGATTACTACGCACCAACGCTCTCAAACGCAGCAGCAAATGAGATAAATGCATTGGGATATATCCACGACGATGAATTTAGAGTCAAAGCTGTCGGAAGTGGAGGTTCGTCGGGGAAGAGCTGGGCACAGCAGACGGAAGAAAGTTATCAGTTGCAGCTGGCCTTGGCTCTCAGGCTTTCTTCAGAGGCCACTTGTGCCGATGATCCCAACTTTATGGATCTGATGCCAGACGAGGCAGCTTCAAGATCGTTGTCAAGTTCAGCTGAGGCTATCTCGCATCGATTTTGGGTAAATGGATGCATGTCATATTTTGAGAAGGTGCCAGATGGTTTGTACCTAATTCATGGGATGGACCCTTATGTATGGTCTTTATGCACCAATCTGAAAGAGGATGGGCGTATACCATCATTTGAATCTCTGAAGACAGTTGACTTCAGCATCCGTTCATCAATTGAAGTAGTTTTCATAGATCGGCATAGTGATGCTAGCCTAAAGGAACTGCAAAACAGGGTCCATAATATTTCTTCTAGCTGTATAACGACAGAAGAGGTTGCGGATCATTTAGCAAAGCTGGTATGCAATCATATGGGGGGTTCAGTTTCTGAGGGAGAAGATGCCTTAGTTCCCTCCTGGAGGGAATGCAGCGATGACTTAAAAGAATGTTTGGGATCTGTTGTGATTCCCTTGTGCAGCTTAGCTGTTGGCCTTTGCAGGCATCGTGCTCTTTTATTCAAAGTGCTAGCAGATTCAATTGATTTGCCTTGTCGAATTGCCAGGGGCTGTAAATATTGCACTAGAGATGATGCTTCATCTTGCCTTGTTAGGTTCGGTCTTGATAGGGAATATGTCATTGATCTGATTGGGAAGCCTGGTTGCTTATGTGAACCTGATTGTTTGCTCAATGGTCCATCATCCATCTCAATTTCTTCACCATTGCGATTTCCAAGACTAAAACCTATTGAATCTAACATTGATTTCAGGTCACTGGCCAAACAGTATTTCTTGGATAGTCAATCACTTAATATTGTATTTGATGAAGCTTCTTCAGACTTCGACAATTGTATGATCAGTGTTGTAATGTGTTCTCGGACACACTGGTTTCTGTTAACAAGTTCAGAATTTTCAATTGCAGGGAATGTTGTATCTGGGAAGGATGCTGCATGCTCTGTCTATCAAAGGCCATTCAACAGGAAGGATGTACATGGAAAAAACATAGTGCTTGCTGGTGACAGGGATAGAAGTCCTCAATTAATGAATCCAAAAGTTACTCAACGGAATGCTCAAGATGGAAAGTCTGAGCAATTTAGATCATGTGATTCTACTGCTCAACATAGTGTACAGTCTACCCCTTTTGTAGAAAATGTGGTTCGTTTAAACCAGATCTCACAGATTGATTCCAGAGATTCTGAGCCTCTCTTAGCACTGCCCTGTCTAAGGATGGATCCTGCTAATAATTTATCATTCATTGATGGTAATCGGCTGGTTAAAAAACCGAATCAGCTTTCCTTTGGCATAGAAGATTTTGTTATTCCATGGAATGATCTTGTTTTGAGGGAGAAAATTGGAGCAGGTTCTTTTGGGACAGTGTATCATGCTGATTGGCACGGCTCAGATGTTGCGGTGAAGATTCTGATGGAACAAGACCTTAATGCAGAACGGTTCGAGGAATTTCTTAGGGAGGTTGCCATAATGAAATCTCTACGACATCCGAACATTGTTCTTTTTATGGGTGCAGTCACTGAGCCTCCAAACTTGTCCATTGTCACAGAATACTTATCAAGAGGGAGTTTGCACAGGCTTTTGCATAGACCTGGGGCACGAGAAGTCTTAGATGAAAGACGTCGGTTAAACATGGCACATGATGTTGCAAAAGGGATGAATTATCTTCACAAACGTAATCCCCCAATTGTTCATCGTGATTTGAAATCTCCAAATATTTTGGTTGATAAGAAGTACACAGTAAAGGTTGGAACTGAGAATCTCTGGCTTTCTATATTGATTATGGACATTATATCTAAAGATTCCATTTGTGATTTTGGGCTTTCACGCTTGAAGGCGCACACATTTCTTTCATCAAAATCAGCTGCTGGGACTCCTGAATGGATGGCACCCGAAGTTCTCCGTGATGAGCCTTCAAATGAGAAATCAGATGTTTATAGCTTTGGTGTGATACTGTGGGAGCTTGCTTCACTGCAGCAACCATGGGGCAACTTGAACCCGGCGCAGGTTGTGGCCGCCGTGGGTTTCAAAGGCAAAAGGCTTGAGATCCCATGTGATTTAAATCCTCAAGTTGCTACTATTATAGAGGCTTGCTTCGCCAGATGTCTTGCTACAGAGGCAAATACGCTGTTGATGTTTTTTTCTACCCGGCATCCTTGCTTTGGAAAATGTGTGTACTTTGATAGTGACGAGCTTATTGCCAATGCTGCCTACATTGGAACACCTGGAAAGGGTATTCTTGCTGCTGATGAATCAACTGGCACAATTGGAAAGCGTTTTGCCAGTATCAATGTCGAGAATGTTGAAACAAACAGACGTGCTCTTCGTGAACTCCTTTTCACTGCTCCTAATGCTCTCCAATACCTCAGCGGAGTCATTCTCTTTGAAGAAACTCTCTACCAGAAGACCTCTGCAGGTAAGCCTTTCGTTGATGTTTTGAAGGAAGGTGGTGTACTCCCAGGTATTAAGGTTGACAAGGGCACTGTTGAACTTGCTGGAACCAACGGCGAAACCACAACCCAGGGTCTTGACGGCCTTGCCCAACGTTGCCAGAAGTATTATGAAGCTGGTGCTCGTTTTGCTAAATGGCGTGCTGTGCTCAAGATTGGTGCTAACGAACCTTCACAGTTGGCTATCAATGAAAATGCCAACGGATTGGCCAGATATGCTATCATATGCCAGGAGAACGGTCTTGTACCCATTGTAGAGCCTGAGATCTTGGTTGATGGTTCTCATGACATCAACAAGTGCGCTGATGTAACTGAACGTGTCCTTGCTGCATGCTACAAGGCTTTAAATGACCACCATGTTCTCCTTGAAGGAACCTTGTTGAAGCCCAACATGGTTACCCCTGGATCTCAATCTGCAAAGGTTGCACCTGAAGTTGTTGCCGAGTACACCGTGCGTGCCCTACAGCGTACAGTTCCTGCTGCAGTCCCTGCTGTGGTGTTCTTGTCTGGTGGACAGAGCGAAGAGGAGGCCACCATCAACCTTAACGCCATGAACAAACTCAAGGGTAAGAAGCCATGGTCTCTTTCCTTCTCCTTTGGACGAGCCCTGCAGCAGAGTACTCTGAAGGCATGGTCCGGAAAGGAAGATAACATCCCCAAAGCTCAGGCTGCTTTACTAGTAAGGTGCAAGGCCAACTCTGAAGCTACTCTTGGAACTTACAAGGGTGATGCTAAGATCAGCGAGGGTGCCTCGGAGAGCCTCCACATCGACAACTACAGCTATTGA 3726 44.66 MEMPGRRSDYTFLSQIPDEEIGTGPSTSFFGSIAAEANISKGRTDRVFDWDGSGDHKLNTQPNRIGNMYSWIGLQRHSSGSSYDDSSLSSDYYAPTLSNAAANEINALGYIHDDEFRVKAVGSGGSSGKSWAQQTEESYQLQLALALRLSSEATCADDPNFMDLMPDEAASRSLSSSAEAISHRFWVNGCMSYFEKVPDGLYLIHGMDPYVWSLCTNLKEDGRIPSFESLKTVDFSIRSSIEVVFIDRHSDASLKELQNRVHNISSSCITTEEVADHLAKLVCNHMGGSVSEGEDALVPSWRECSDDLKECLGSVVIPLCSLAVGLCRHRALLFKVLADSIDLPCRIARGCKYCTRDDASSCLVRFGLDREYVIDLIGKPGCLCEPDCLLNGPSSISISSPLRFPRLKPIESNIDFRSLAKQYFLDSQSLNIVFDEASSDFDNCMISVVMCSRTHWFLLTSSEFSIAGNVVSGKDAACSVYQRPFNRKDVHGKNIVLAGDRDRSPQLMNPKVTQRNAQDGKSEQFRSCDSTAQHSVQSTPFVENVVRLNQISQIDSRDSEPLLALPCLRMDPANNLSFIDGNRLVKKPNQLSFGIEDFVIPWNDLVLREKIGAGSFGTVYHADWHGSDVAVKILMEQDLNAERFEEFLREVAIMKSLRHPNIVLFMGAVTEPPNLSIVTEYLSRGSLHRLLHRPGAREVLDERRRLNMAHDVAKGMNYLHKRNPPIVHRDLKSPNILVDKKYTVKVGTENLWLSILIMDIISKDSICDFGLSRLKAHTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELASLQQPWGNLNPAQVVAAVGFKGKRLEIPCDLNPQVATIIEACFARCLATEANTLLMFFSTRHPCFGKCVYFDSDELIANAAYIGTPGKGILAADESTGTIGKRFASINVENVETNRRALRELLFTAPNALQYLSGVILFEETLYQKTSAGKPFVDVLKEGGVLPGIKVDKGTVELAGTNGETTTQGLDGLAQRCQKYYEAGARFAKWRAVLKIGANEPSQLAINENANGLARYAIICQENGLVPIVEPEILVDGSHDINKCADVTERVLAACYKALNDHHVLLEGTLLKPNMVTPGSQSAKVAPEVVAEYTVRALQRTVPAAVPAVVFLSGGQSEEEATINLNAMNKLKGKKPWSLSFSFGRALQQSTLKAWSGKEDNIPKAQAALLVRCKANSEATLGTYKGDAKISEGASESLHIDNYSY 1241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9188594 9199839 - CmoCh03G011700.1 Cmo03g01170 378633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01170 1241 CDD STKc_MAP3K-like 611 861 - -
Cmo03g01170 1241 ProSitePatterns Serine/Threonine protein kinases active-site signature. 726 738 IPR008271 GO:0004672|GO:0006468
Cmo03g01170 1241 ProSitePatterns Fructose-bisphosphate aldolase class-I active site. 1100 1110 IPR029768 -
Cmo03g01170 1241 ProSitePatterns Protein kinases ATP-binding region signature. 611 632 IPR017441 GO:0005524
Cmo03g01170 1241 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 756 864 - -
Cmo03g01170 1241 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 119 747 - -
Cmo03g01170 1241 CDD FBP_aldolase_I_a 892 1220 - -
Cmo03g01170 1241 Pfam Ethylene-responsive protein kinase Le-CTR1 178 384 - -
Cmo03g01170 1241 SUPERFAMILY Aldolase 892 1241 - -
Cmo03g01170 1241 Gene3D Aldolase class I 886 1241 IPR013785 -
Cmo03g01170 1241 Gene3D Phosphorylase Kinase; domain 1 599 683 - -
Cmo03g01170 1241 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 119 747 - -
Cmo03g01170 1241 SUPERFAMILY Protein kinase-like (PK-like) 586 863 IPR011009 -
Cmo03g01170 1241 Pfam Fructose-bisphosphate aldolase class-I 894 1241 IPR000741 GO:0004332|GO:0006096
Cmo03g01170 1241 SMART serkin_6 605 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01170 1241 ProSiteProfiles Protein kinase domain profile. 605 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01170 1241 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 756 864 - -
Cmo03g01170 1241 Gene3D Transferase(Phosphotransferase) domain 1 684 872 - -
Cmo03g01170 1241 Pfam Protein tyrosine and serine/threonine kinase 606 863 IPR001245 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01170 Cmo14g00273 CCT
Cmo03g01170 Cmo06g00451 CCT
Cmo03g01170 Cmo07g00900 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01170 Cmo-Chr3:9188594 Cmo14g00266 Cmo-Chr14:1195739 0 dispersed
Cmo14g00273 Cmo-Chr14:1235141 Cmo03g01170 Cmo-Chr3:9188594 0 wgd
Cmo03g01170 Cmo-Chr3:9188594 Cmo06g00442 Cmo-Chr6:2118798 0 wgd
Cmo03g01170 Cmo-Chr3:9188594 Cmo07g00900 Cmo-Chr7:4286039 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74207 PF00274 Glycolytic 4.00E-172 CL0035 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01170 K14510 - csv:101208800 1371.68