Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01183 ATGGCAGCCATTGTTCCGCACTCTGCAAACGCCATTTCTGCAGCTTCTCTTCTTCCTTCCACCATCCTTTTCCGCTTTCCTTCTATGCCCATCAATTCTTCACCTTCAACGCCACCGCCGCCACTTTTATCCAAAACCTCTTTATCTCTCTGTAACCCAAAGCCTTGTCACCTCCCACTCAATTCCACATCTCCGACCCATTTCCTAGCCTGCGCACAATCCGCTGTGTCAATTTCAGAACCCCTTTTCGCTTCACGCTCTGTATATAGCTCTACCTCTCCAATTACTTCCGGCTTCGATTTGCTTCGCTTACCCACTCGCTATGGTGACGCTGACCTCGCCAGAGCTGTTCATGCTTGTTTTCTCAAGCTCGAGGAAGATGTTTATCTGGGTAATGCTCTAATTGCAGCTTATCTCAGGTTGGGGCTTGTTCGAGATGCTGATAAAGTCTTTTCTGGACTTTCGTGTCCTAATGTGGTGTCTTATTCGGCGATGATTTCTGGGTTTTCCAAGTCGAACCGGGAAGATGAAGCTGTTGAGCTTTTCTTTGCGATGTTGGACTCGGGTATTGAGCCGAATGAATACACTTTTGTTGCAATTTTGACTGCTTGCATTCGAAACATGGATTATCAATTAGGTTCTCAAATTCATGATATTATCATCAAATTGGGGTACCTGAATTGTGTTTTCATTTGCAATGCACTTTTGGGATTCTATAGTAAGTGTGGGTTTTTGGAACTTGTACTTAGATTGTTCGACGAAATGCCTGAGAGAGACATTACTTCGTGGAATACTGTTATATCTAGTTTGGTGAATGAGTTCAGGTATGATGAAGCGTTCGATTACTTTCGTGGTATGCAACGAAGTGAGGGGCTCAGAGTGGATCATTTCTCTCTTTCTACTCTATTGACAGCTTCTACTGGCAGTGTTAAGCCAATGAAGGGCCAACAACTTCACGCTCTTGGATTGAAGGTCGGGCTGGAGTCTCATTTGAGCGTCAGCAATTCGCTTATTGGGTTCTATACTAAATGTGGGAGTGTAGACGATGTAATGAAACTGTTTGAGTCAATGCCAATAAGAGATGTTATTACTTGGACAGGAATGATAACATCATACATGGAATTCGGAAAGTCGGATTTGGCAGTCGAAGTGTTCAATAACATGCCAGAGAGGAATTGTGTCTCTTACAATGCAGTTTTGGCTGGACTTTCTAGGAATGGCGACGGGTCGAGAGCTCTGGAGCTTTTCATCGAAATGTTGGATGAGGGCATGGAAATATCAGATTGCACATTGACTAGCATCATCAATGCTTGTGGGTTGCTCAAGAATTTGAGACTCAGCCAGCAGATTCAAGGCTTCATCATCAAGTTTGGGATTTTGCCAAATTCTTGTATTGAAACAGCATTGGTTGACATGTATACAAGGTTGGGGAGGATGGCGGATGCAGAAAAGATGTTTCATCAGCGTTCATTAGAGAATGACTACACTGCAATGCTAACATCAATGATTTGTGGGTATGCTCGAAACAAGCAACTTAATGAAGCAATCTCTCTCTTTCACTCTGGTCAATCTGAAGGAGCTATTGTCATGGATGAAGTTGTGTCAACGTCAATACTCTCTCTTTGTGGAAGTATAGGTTTTCATGAGATGGGGAAGCAAATGCATTGCCATGCACTTAAATCAGGTCTCATAACTGATACAGGCGTTGGAAACGCAACCGTTAGCATGTACTCCAAGTGCTGGAATATGGACGATGCCGTTCGAGTATTCGACACAATGAACATGCAAGACGTAGTTTCCTGGAATGGTTTGATTTCTGGACATTTGCTTCATAGACAGGGTGATAAAACCTTGGAAATCTGGAAGAAGATGGAGAAAGCAGGAGTAAAACCTGACAATATTACGTTTGTTTTGGTTATTTCAGCGTACAAACACACTGAATTTGATTTAGTAGATAGCTGTCGTAGCTTATTTTTCTCTATGAAAACTAAGTACAATATCAAACCCACATCAGAGCATTATGCCTCCTTTATCAGTGTTTTGGGTCGTTGGGGTCATCTCGAAGAAGCTGAAGAAACAATCAGAAGGATACCTTTCGAACCGGGCGTTAATGTCTGGCGCGCTTTGCTTGATAGTTGTAGAATCAACAAAAACGAAAGGCTGGAAAAGCTTGCTGCAAGATGCATACTGGCTGTGGAACCAAAAGATCCATTTACTTACATACTTAAATCGAATCTATACTCTGCATCAGGGAGATGGCATTATTCTGAAAAGGTAAGAGAGGATATGCGGGAGAAAGGATTCAGGAAACACCCAAGTCAGAGTTGGATCATCCATGAGAACAGAATTCATTCATTCTATGCCAGAGACAAGTCTCATCCCCAAGTAAAAGACATTTACAGTGGACTAGACATACTAGTCTTAGAATGTTTAAAAGCTGGATATGTTCCAGACACGAGTTTTGTTCTTCAAGAAGTAGACGAACATCAAAAGAAGGAATTTTTGTTCTATCACAGTGGGAAATTAGCTGCAACTTTCGGCATTCTAATGACGAGACCAGGACAGCCCGTCCGAATCGTGAAGAGTGTTCAAGGAAAATATTTGTCAGGGATACTTCAGGGTTTCATTGCTTTGCAGATGGCCAATGCTCATGTAAAGATTACTGGTAATCGTAATCCAACCGTGGCACGGGTCTTAACTACTTTTTGA 2709 42.38 MAAIVPHSANAISAASLLPSTILFRFPSMPINSSPSTPPPPLLSKTSLSLCNPKPCHLPLNSTSPTHFLACAQSAVSISEPLFASRSVYSSTSPITSGFDLLRLPTRYGDADLARAVHACFLKLEEDVYLGNALIAAYLRLGLVRDADKVFSGLSCPNVVSYSAMISGFSKSNREDEAVELFFAMLDSGIEPNEYTFVAILTACIRNMDYQLGSQIHDIIIKLGYLNCVFICNALLGFYSKCGFLELVLRLFDEMPERDITSWNTVISSLVNEFRYDEAFDYFRGMQRSEGLRVDHFSLSTLLTASTGSVKPMKGQQLHALGLKVGLESHLSVSNSLIGFYTKCGSVDDVMKLFESMPIRDVITWTGMITSYMEFGKSDLAVEVFNNMPERNCVSYNAVLAGLSRNGDGSRALELFIEMLDEGMEISDCTLTSIINACGLLKNLRLSQQIQGFIIKFGILPNSCIETALVDMYTRLGRMADAEKMFHQRSLENDYTAMLTSMICGYARNKQLNEAISLFHSGQSEGAIVMDEVVSTSILSLCGSIGFHEMGKQMHCHALKSGLITDTGVGNATVSMYSKCWNMDDAVRVFDTMNMQDVVSWNGLISGHLLHRQGDKTLEIWKKMEKAGVKPDNITFVLVISAYKHTEFDLVDSCRSLFFSMKTKYNIKPTSEHYASFISVLGRWGHLEEAEETIRRIPFEPGVNVWRALLDSCRINKNERLEKLAARCILAVEPKDPFTYILKSNLYSASGRWHYSEKVREDMREKGFRKHPSQSWIIHENRIHSFYARDKSHPQVKDIYSGLDILVLECLKAGYVPDTSFVLQEVDEHQKKEFLFYHSGKLAATFGILMTRPGQPVRIVKSVQGKYLSGILQGFIALQMANAHVKITGNRNPTVARVLTTF 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9253644 9256814 - CmoCh03G011830.1 Cmo03g01183 378646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01183 902 TIGRFAM PPR: pentatricopeptide repeat domain 231 260 IPR002885 -
Cmo03g01183 902 TIGRFAM PPR: pentatricopeptide repeat domain 394 427 IPR002885 -
Cmo03g01183 902 TIGRFAM PPR: pentatricopeptide repeat domain 363 394 IPR002885 -
Cmo03g01183 902 TIGRFAM PPR: pentatricopeptide repeat domain 262 295 IPR002885 -
Cmo03g01183 902 TIGRFAM PPR: pentatricopeptide repeat domain 499 521 IPR002885 -
Cmo03g01183 902 TIGRFAM PPR: pentatricopeptide repeat domain 599 632 IPR002885 -
Cmo03g01183 902 TIGRFAM PPR: pentatricopeptide repeat domain 160 194 IPR002885 -
Cmo03g01183 902 Gene3D Tetratricopeptide repeat domain 649 797 IPR011990 GO:0005515
Cmo03g01183 902 Gene3D Tetratricopeptide repeat domain 447 547 IPR011990 GO:0005515
Cmo03g01183 902 Pfam PPR repeat family 597 643 IPR002885 -
Cmo03g01183 902 Pfam PPR repeat family 157 205 IPR002885 -
Cmo03g01183 902 Pfam PPR repeat family 392 438 IPR002885 -
Cmo03g01183 902 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 597 631 IPR002885 -
Cmo03g01183 902 PANTHER OS07G0172600 PROTEIN 69 863 - -
Cmo03g01183 902 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 736 770 IPR002885 -
Cmo03g01183 902 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 391 IPR002885 -
Cmo03g01183 902 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Cmo03g01183 902 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Cmo03g01183 902 Gene3D Tetratricopeptide repeat domain 323 446 IPR011990 GO:0005515
Cmo03g01183 902 Gene3D Tetratricopeptide repeat domain 86 220 IPR011990 GO:0005515
Cmo03g01183 902 Gene3D Tetratricopeptide repeat domain 548 648 IPR011990 GO:0005515
Cmo03g01183 902 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 69 863 - -
Cmo03g01183 902 Pfam E motif 721 777 IPR046848 -
Cmo03g01183 902 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Cmo03g01183 902 Pfam PPR repeat 262 289 IPR002885 -
Cmo03g01183 902 Pfam PPR repeat 132 152 IPR002885 -
Cmo03g01183 902 Pfam PPR repeat 231 260 IPR002885 -
Cmo03g01183 902 Pfam PPR repeat 499 522 IPR002885 -
Cmo03g01183 902 Pfam PPR repeat 335 358 IPR002885 -
Cmo03g01183 902 Pfam PPR repeat 467 487 IPR002885 -
Cmo03g01183 902 Pfam PPR repeat 574 594 IPR002885 -
Cmo03g01183 902 Pfam DYW family of nucleic acid deaminases 814 863 IPR032867 GO:0008270
Cmo03g01183 902 Pfam E+ motif 783 804 IPR046849 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01183 Cmo-Chr3:9253644 Cmo18g01256 Cmo-Chr18:12305510 3.08E-20 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01183 - - csv:101205681 1420.22