Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01193 ATGACGAAGCCATCCTTCCCATCGACATGCCTGTTGGCATCTCTGCTGAGCCTGCTGTTGCTTATAATGGCCCATGCACACGCCGCGGCCTCGATGGGGCATCGCCCTTACGCGAAAGCGCACAGGGAATTAGGCGCGCGGCTTGTTAAAAAGCACAACAGGCCGCCGTTTAAGCCCGGCCCTTGGAAACGCGCTCGTGCTACCTTCTATGAAGGTGGCCCCGGAACCTTTGGTCGTGCATGTGGGTACAGCGACGTGGAAAAGGAAGGGTATGGGCTGCAGACGGCGGCATTAAGCATGGCGCTGTTTAACAACGGGCAGAAATGCGGCGCTTGCTTTGAACTCAAATGCATGGACAATCCTGATTGCAAGCCTGGGCAGCCCTCCCTCGTGGTAACCGGCACCAACCACTGTCCACCCAACTACAACGCTGCCAATGACAATGGCGGATGGTGCAATCCCCCCCTCGAGCATTTCGACATAGCCAAGCCTGTTTTCGCCAACCTTGCCGACTATAAGGCCGGCGTCATTCCCATCACTTACCGCAGGGTTCCATGCCAAAAGCAAGGAGGAATTCGCTTCACAATCACTGGAAACCCATACTTCAACGAAGTAATGGTGTGGAACGTGGGAGGAGCTGGGGACATAACGGCTGTCCAAGTCAAGGGCCACCGTAAGCTGAAATGGACCGCCATGTCTCGTCTGTGGGGTCAAAAATGGACCACCAACGCCATGATGGTTGGCGAGTCGCTCACCTTCAGGGTTCGAGCCAGCGATGGCAGATTCTCCACTGCATGGCATGTTGCTCCCGCCAATTGGCAGTTTGGGGTGGTTTACTCCGTCGATTTCGCCGTTACAAATAATTGTCAGTTCCCAATTTGGCCGGGAGCCTTGACCGGAATTGGCACCCCTCTCTCCACCACTGGCTTCGAATTACTCCCCGGATCAACGTCGACGGTGACCACATCTCCGCCGTGGTCCGGCAGGTTTTGGGCTCGAACCCTTTGCTCCATAGACGCGAGTGGGAAGTTCAATTGCGGAACCGCTGATTGCGGCAGCGGCCAAGTGGCATGCAATGGCGCTGGCGCAATTCCGCCTGCAAGCCTTGTTGAATTCACTATAGCGCCAACCGGTGGCGTAGATTACTTCGACATCAGCCTCGTTGATGGCTTTAACTTGCCTGTTTCGGTGACGCCAATGGGCGGAACCAGTGAGTGCCAAGCGGTAGTTTGTGCAGGCAATGTAAATGCAATTTGTCCACCGGAATTAGCCATCAGAGGACAAGATGGTGCAGTGATCGCGTGTAAAAGTGCTTGTATGGCTTTCAATCAGCCCGAATTTTGTTGCAGCGGCGACCACAATCAGCCACAAACTTGCCCGCCCACAGATTATTCGAAGATGTTCAAGGATCAATGCCCCCAGGCTTATAGTTACGCTTACGATGATCAAACAAGTATCTTTACGTGCACGGCCGGAGCCAATTATGGCATCACTTTTTGTCCTTGA 1506 54.32 MTKPSFPSTCLLASLLSLLLLIMAHAHAAASMGHRPYAKAHRELGARLVKKHNRPPFKPGPWKRARATFYEGGPGTFGRACGYSDVEKEGYGLQTAALSMALFNNGQKCGACFELKCMDNPDCKPGQPSLVVTGTNHCPPNYNAANDNGGWCNPPLEHFDIAKPVFANLADYKAGVIPITYRRVPCQKQGGIRFTITGNPYFNEVMVWNVGGAGDITAVQVKGHRKLKWTAMSRLWGQKWTTNAMMVGESLTFRVRASDGRFSTAWHVAPANWQFGVVYSVDFAVTNNCQFPIWPGALTGIGTPLSTTGFELLPGSTSTVTTSPPWSGRFWARTLCSIDASGKFNCGTADCGSGQVACNGAGAIPPASLVEFTIAPTGGVDYFDISLVDGFNLPVSVTPMGGTSECQAVVCAGNVNAICPPELAIRGQDGAVIACKSACMAFNQPEFCCSGDHNQPQTCPPTDYSKMFKDQCPQAYSYAYDDQTSIFTCTAGANYGITFCP 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9325015 9327592 - CmoCh03G011930.1 Cmo03g01193 378656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01193 501 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 78 191 IPR007112 -
Cmo03g01193 501 PRINTS Expansin signature 149 166 IPR002963 GO:0009664
Cmo03g01193 501 PRINTS Expansin signature 130 140 IPR002963 GO:0009664
Cmo03g01193 501 PRINTS Expansin signature 190 202 IPR002963 GO:0009664
Cmo03g01193 501 PRINTS Expansin signature 90 104 IPR002963 GO:0009664
Cmo03g01193 501 PRINTS Expansin signature 166 179 IPR002963 GO:0009664
Cmo03g01193 501 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Cmo03g01193 501 PRINTS Expansin signature 267 283 IPR002963 GO:0009664
Cmo03g01193 501 PRINTS Expansin signature 238 259 IPR002963 GO:0009664
Cmo03g01193 501 PRINTS Expansin/Lol pI family signature 174 190 IPR007118 GO:0005576
Cmo03g01193 501 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Cmo03g01193 501 PRINTS Expansin/Lol pI family signature 99 117 IPR007118 GO:0005576
Cmo03g01193 501 PRINTS Expansin/Lol pI family signature 267 281 IPR007118 GO:0005576
Cmo03g01193 501 PRINTS Expansin/Lol pI family signature 61 76 IPR007118 GO:0005576
Cmo03g01193 501 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 201 281 IPR007117 -
Cmo03g01193 501 SMART dpbb_1 95 181 IPR007112 -
Cmo03g01193 501 ProSitePatterns Thaumatin family signature. 342 358 IPR017949 -
Cmo03g01193 501 SUPERFAMILY PHL pollen allergen 188 279 IPR036749 -
Cmo03g01193 501 CDD TLP-PA 283 500 - -
Cmo03g01193 501 SUPERFAMILY Osmotin, thaumatin-like protein 283 501 IPR037176 -
Cmo03g01193 501 Pfam Thaumatin family 287 501 IPR001938 -
Cmo03g01193 501 Pfam Expansin C-terminal domain 192 270 IPR007117 -
Cmo03g01193 501 PANTHER EXPANSIN-A32 13 280 - -
Cmo03g01193 501 Pfam Lytic transglycolase 95 181 IPR009009 -
Cmo03g01193 501 SUPERFAMILY Barwin-like endoglucanases 61 209 IPR036908 -
Cmo03g01193 501 Gene3D - 46 187 IPR036908 -
Cmo03g01193 501 SMART tha2 283 501 IPR001938 -
Cmo03g01193 501 Gene3D - 190 283 IPR036749 -
Cmo03g01193 501 Gene3D Thaumatin 284 501 IPR037176 -
Cmo03g01193 501 PANTHER EXPANSIN-A15 13 280 IPR002963 GO:0009664
Cmo03g01193 501 ProSiteProfiles Thaumatin family profile. 280 501 IPR001938 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01193 Cmo14g00231 CCT
Cmo03g01193 Cmo07g00919 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01193 Cmo-Chr3:9325015 Cmo02g00797 Cmo-Chr2:4921039 1.64E-94 dispersed
Cmo19g00292 Cmo-Chr19:2173002 Cmo03g01193 Cmo-Chr3:9325015 5.51E-83 dispersed
Cmo19g00293 Cmo-Chr19:2176427 Cmo03g01193 Cmo-Chr3:9325015 2.23E-83 dispersed
Cmo03g01193 Cmo-Chr3:9325015 Cmo06g00402 Cmo-Chr6:1954398 5.21E-38 wgd
Cmo03g01193 Cmo-Chr3:9325015 Cmo07g00919 Cmo-Chr7:4410234 1.88E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01193 - - csv:101204720 437.958