Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01198 ATGCCGATCCGTAACATCGCCGTTGGAAGGCCCGATGAGGCTACCAGTCCGGATGCTTTGAAGGCTGGGTTGGCTGAGTTCATTTCCACCTTGATTTTTGTTTTTGCCGGCCAAGGTTCCGGCATAGCCTTCAGTAAGCTTACTGACGGCGGCGCCGCCACTCCCGCCGGCCTCATCTCCGCCTCCATCGCTCATGCCTTTGCCCTGTTTGTCGCCGTCTCCGTCGGCGCTAACATCTCTGGCGGCCACGTCAACCCCGCTGTTACCTTCGGCGCCTTCGTCGGCGGTAACATCACCCTCCTACGTGGCATCATCTACTGGATTGCCCAGCTCCTCGGATCCGTCGTTGCCTGCTTGCTCCTTAAGTTCGTTACTGGCTTGCCCACCGGAAGCTTCGCTCTATCAGCTGGAGTCGGTGAACTAAACGCCTTCGTTTTCGAGATCGTGATGACATTCGGATTGGTGTACACAGTGTACGCGACGGCAGTGGATCCCAAGAAGGGCAGTTTGGGAACAATTGCACCCATCGCAATCGGTTTCATCGTCGGAGCTAACATCTTAGCCGGTGGAGCATTCACCGGAGCCTCGATGAACCCAGCGGTGGCATTTGGACCATCCGTGGTGAGCTGGTCATGGGACAACCACTGGGTCTACTGGGCTGGACCTCTGATCGGAGGTGGTCTTGCTGGGCTCATCTACGAGTTCATCTTCATCTCCAACTCCCACGAGCAACTCCCAAGCACCGACTACTAA 753 56.84 MPIRNIAVGRPDEATSPDALKAGLAEFISTLIFVFAGQGSGIAFSKLTDGGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIIYWIAQLLGSVVACLLLKFVTGLPTGSFALSAGVGELNAFVFEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILAGGAFTGASMNPAVAFGPSVVSWSWDNHWVYWAGPLIGGGLAGLIYEFIFISNSHEQLPSTDY 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9354988 9356657 + CmoCh03G011980.1 Cmo03g01198 378661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01198 250 PANTHER AQUAPORIN-8 1 250 IPR034294 -
Cmo03g01198 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01198 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01198 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01198 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01198 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01198 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01198 250 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Cmo03g01198 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01198 250 SUPERFAMILY Aquaporin-like 13 243 IPR023271 -
Cmo03g01198 250 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01198 250 PANTHER AQUAPORIN TIP1-1 1 250 - -
Cmo03g01198 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01198 Cmo14g00225 CCT
Cmo03g01198 Cmo07g00921 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01198 Cmo-Chr3:9354988 Cmo13g00982 Cmo-Chr13:8400229 1.39E-104 dispersed
Cmo08g00682 Cmo-Chr8:4365247 Cmo03g01198 Cmo-Chr3:9354988 1.59E-99 transposed
Cmo12g00210 Cmo-Chr12:1376613 Cmo03g01198 Cmo-Chr3:9354988 5.42E-81 transposed
Cmo15g01435 Cmo-Chr15:9743965 Cmo03g01198 Cmo-Chr3:9354988 5.05E-55 transposed
Cmo02g01579 Cmo-Chr2:9115713 Cmo03g01198 Cmo-Chr3:9354988 3.41E-102 transposed
Cmo14g00225 Cmo-Chr14:1039713 Cmo03g01198 Cmo-Chr3:9354988 9.37E-128 wgd
Cmo03g01198 Cmo-Chr3:9354988 Cmo07g00921 Cmo-Chr7:4427126 2.51E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01198 K09873 - csv:101204225 467.618