Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo03g01198 | ATGCCGATCCGTAACATCGCCGTTGGAAGGCCCGATGAGGCTACCAGTCCGGATGCTTTGAAGGCTGGGTTGGCTGAGTTCATTTCCACCTTGATTTTTGTTTTTGCCGGCCAAGGTTCCGGCATAGCCTTCAGTAAGCTTACTGACGGCGGCGCCGCCACTCCCGCCGGCCTCATCTCCGCCTCCATCGCTCATGCCTTTGCCCTGTTTGTCGCCGTCTCCGTCGGCGCTAACATCTCTGGCGGCCACGTCAACCCCGCTGTTACCTTCGGCGCCTTCGTCGGCGGTAACATCACCCTCCTACGTGGCATCATCTACTGGATTGCCCAGCTCCTCGGATCCGTCGTTGCCTGCTTGCTCCTTAAGTTCGTTACTGGCTTGCCCACCGGAAGCTTCGCTCTATCAGCTGGAGTCGGTGAACTAAACGCCTTCGTTTTCGAGATCGTGATGACATTCGGATTGGTGTACACAGTGTACGCGACGGCAGTGGATCCCAAGAAGGGCAGTTTGGGAACAATTGCACCCATCGCAATCGGTTTCATCGTCGGAGCTAACATCTTAGCCGGTGGAGCATTCACCGGAGCCTCGATGAACCCAGCGGTGGCATTTGGACCATCCGTGGTGAGCTGGTCATGGGACAACCACTGGGTCTACTGGGCTGGACCTCTGATCGGAGGTGGTCTTGCTGGGCTCATCTACGAGTTCATCTTCATCTCCAACTCCCACGAGCAACTCCCAAGCACCGACTACTAA | 753 | 56.84 | MPIRNIAVGRPDEATSPDALKAGLAEFISTLIFVFAGQGSGIAFSKLTDGGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIIYWIAQLLGSVVACLLLKFVTGLPTGSFALSAGVGELNAFVFEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILAGGAFTGASMNPAVAFGPSVVSWSWDNHWVYWAGPLIGGGLAGLIYEFIFISNSHEQLPSTDY | 250 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 9354988 | 9356657 | + | CmoCh03G011980.1 | Cmo03g01198 | 378661 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo03g01198 | 250 | PANTHER | AQUAPORIN-8 | 1 | 250 | IPR034294 | - | |
Cmo03g01198 | 250 | PRINTS | Major intrinsic protein family signature | 21 | 40 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo03g01198 | 250 | PRINTS | Major intrinsic protein family signature | 65 | 89 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo03g01198 | 250 | PRINTS | Major intrinsic protein family signature | 102 | 121 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo03g01198 | 250 | PRINTS | Major intrinsic protein family signature | 146 | 164 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo03g01198 | 250 | PRINTS | Major intrinsic protein family signature | 179 | 201 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo03g01198 | 250 | PRINTS | Major intrinsic protein family signature | 216 | 236 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo03g01198 | 250 | Gene3D | Glycerol uptake facilitator protein. | 4 | 250 | IPR023271 | - | |
Cmo03g01198 | 250 | Pfam | Major intrinsic protein | 14 | 233 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo03g01198 | 250 | SUPERFAMILY | Aquaporin-like | 13 | 243 | IPR023271 | - | |
Cmo03g01198 | 250 | CDD | MIP | 21 | 236 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo03g01198 | 250 | PANTHER | AQUAPORIN TIP1-1 | 1 | 250 | - | - | |
Cmo03g01198 | 250 | ProSitePatterns | MIP family signature. | 83 | 91 | IPR022357 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g01198 | Cmo14g00225 | CCT | |
Cmo03g01198 | Cmo07g00921 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g01198 | Cmo-Chr3:9354988 | Cmo13g00982 | Cmo-Chr13:8400229 | 1.39E-104 | dispersed | |
Cmo08g00682 | Cmo-Chr8:4365247 | Cmo03g01198 | Cmo-Chr3:9354988 | 1.59E-99 | transposed | |
Cmo12g00210 | Cmo-Chr12:1376613 | Cmo03g01198 | Cmo-Chr3:9354988 | 5.42E-81 | transposed | |
Cmo15g01435 | Cmo-Chr15:9743965 | Cmo03g01198 | Cmo-Chr3:9354988 | 5.05E-55 | transposed | |
Cmo02g01579 | Cmo-Chr2:9115713 | Cmo03g01198 | Cmo-Chr3:9354988 | 3.41E-102 | transposed | |
Cmo14g00225 | Cmo-Chr14:1039713 | Cmo03g01198 | Cmo-Chr3:9354988 | 9.37E-128 | wgd | |
Cmo03g01198 | Cmo-Chr3:9354988 | Cmo07g00921 | Cmo-Chr7:4427126 | 2.51E-172 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo03g01198 | K09873 | - | csv:101204225 | 467.618 |