Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01201 ATGTTGACCACAACCTGCATTGTGCTGCTAGCTTTGCTGCTACCCTCCTGCTGGCCGCTAGGTGCCGCCGCCGCCGCTCTCAACCTCACTCTCCCCGGCCAGCATCCGAGCCCTGAACTGGTTGCTCAAGAAGTTCACAGGAAAGTGAATGCTTCCGTAACGAGAAGGCAATTGCTCCAAAGCTTAGAGAAAGACGAATCTTCTTCTTGCTACACCGGGAACCCCATCGACGACTGCTGGAAATGCGATCCAAACTGGCCAAACAACCGCCAGCGCCTCGCCGATTGCGCCATAGGCTTCGGCCAGTACGCACTCGGCGGCAAGAACGGCGAGTTCTACATCGTCACAGACGATTCCGACGACGATGCAGTCAATCCAAAGCCCGGAACGTTACGATACGCCGTGATACAGCCTCAACCTCTCTGGATCGTCTTCCCGGCCAACATGCTCATTAAACTCAAACAGGAACTCATCTTCAACAGCTACAAAACCCTAGACGGCCGCGGCGCCAATGTCCACATCGTCGGCGGTGGCTGCATTACATTGCAGTACATAAGCAACGTCATCATCCACAACATCCACATCCACCATTGTTATCCATCGGGTAACACCATGGTCCGATCAAGCCCGACGCATTACGGATACCGCACGAAATCGGACGGCGACGGGATATCCATCTTCGGATCGAAGGACATATGGATTGACCATTGCTCACTCTCGCATTGCAAAGATGGGCTGATTGACGCGGTGATGGGCTCCACCGGAATCACAATTTCAAACAATTATTTCTCACATCACGATGAGGTTATGCTTTTGGGTCACAGCGATAGCTACTTGCCGGATTCCGGAATGCAGGTAACAATAGCGTTCAACCACTTCGGCGAGAAGCTAGTTCAAAGGATGCCGCGATGCCGGCGAGGGTACATTCACGTTGTCAACAACGACTTCACCCAATGGGAAATGTACGCAATCGGCGGCAGTGGGAGCCCCACCATCAACAGCCAAGGCAACCGCTACACCGCCCCATACGACCGCAACGCCAAGGAGGTGACCAAGCGGGTTGAAACATCGGAGTCCGAGTGGCGGGGTTGGAACTGGCGCTCCGACGGCGACATCCTCGTTAACGGCGCCTTCTTCGTTACCTCTGGCCAAGGCCTCGAAGTCAAGTACGAGAAGGCCTACAGCGTCGAGCCCAAATCAGTCGCCCTGATCGACCAGCTCACTTGGCACGCTGGCCCGCTTGGCGTCGGCGGCAGGGATAACAATTTGGGGATGTGGACCACTGGCCCCAATGGAGGGGGAGGCTTTGTCATTGGGTCTGGTCCGGATTACACTGACGACATGTCCGAAAGCTTGTCTCGGATTGGGTCTCCTTATTTTGTTATGGTATTGTCTGTTTTGTTGTGTTCTTTTTGCGCATTGGCACTCGCATTTGTGCAATGA 1443 54.4 MLTTTCIVLLALLLPSCWPLGAAAAALNLTLPGQHPSPELVAQEVHRKVNASVTRRQLLQSLEKDESSSCYTGNPIDDCWKCDPNWPNNRQRLADCAIGFGQYALGGKNGEFYIVTDDSDDDAVNPKPGTLRYAVIQPQPLWIVFPANMLIKLKQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDSYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGSPTINSQGNRYTAPYDRNAKEVTKRVETSESEWRGWNWRSDGDILVNGAFFVTSGQGLEVKYEKAYSVEPKSVALIDQLTWHAGPLGVGGRDNNLGMWTTGPNGGGGFVIGSGPDYTDDMSESLSRIGSPYFVMVLSVLLCSFCALALAFVQ 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9366781 9369867 - CmoCh03G012010.1 Cmo03g01201 378664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01201 480 PANTHER PECTATE LYASE 12-RELATED 2 435 - -
Cmo03g01201 480 SMART amb_all 148 345 IPR002022 -
Cmo03g01201 480 SUPERFAMILY Pectin lyase-like 68 387 IPR011050 -
Cmo03g01201 480 PRINTS Pollen allergen Amb family signature 96 113 IPR018082 -
Cmo03g01201 480 PRINTS Pollen allergen Amb family signature 120 145 IPR018082 -
Cmo03g01201 480 PRINTS Pollen allergen Amb family signature 156 172 IPR018082 -
Cmo03g01201 480 PRINTS Pollen allergen Amb family signature 220 241 IPR018082 -
Cmo03g01201 480 PRINTS Pollen allergen Amb family signature 300 319 IPR018082 -
Cmo03g01201 480 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Cmo03g01201 480 PRINTS Pollen allergen Amb family signature 364 388 IPR018082 -
Cmo03g01201 480 PRINTS Pollen allergen Amb family signature 393 416 IPR018082 -
Cmo03g01201 480 PANTHER PECTATE LYASE 18-RELATED 2 435 IPR045032 GO:0030570
Cmo03g01201 480 Pfam Pectate lyase 154 337 IPR002022 -
Cmo03g01201 480 Gene3D - 73 415 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01201 Cmo-Chr3:9366781 Cmo04g01465 Cmo-Chr4:7492582 0 dispersed
Cmo15g00508 Cmo-Chr15:2333478 Cmo03g01201 Cmo-Chr3:9366781 0 wgd
Cmo03g01201 Cmo-Chr3:9366781 Cmo04g02667 Cmo-Chr4:19398147 2.02E-19 wgd
Cmo03g01201 Cmo-Chr3:9366781 Cmo07g00925 Cmo-Chr7:4447501 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01201 K01728 - csv:101203012 873.233