Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01227 ATGGCCCCCATCGAGCCCATTTCCCAGACCTCCACTATTGACCCGCTCAACTGGGGTGTGGCGGCTGAGTCTCTCAAGGGAAGTCATCTTGATGAGGTGAAGCGCATGGTGGAGGAGTACCGGAGGCCCCTTGTCAAGCTTGGCGGTCAAACCCTCACCATTTCCCAAGTGGCTGCCATTGCTACTAGGGACTCTGATGTTACTGTCGAGCTTTCTGAGTCTTCCAGAGCTGGTGTTAAGGCCAGTAGTGATTGGGTTATGGAGAGTATGAATAAGGGGACTGATAGCTATGGTGTTACTACCGGCTTTGGTGCTACCTCCCATAGAAGAACCAACCAAGGTGGTGCTCTCCAAAAGGAGTTGATTAGGTTTTTGAATGCTGGCATTTTTGGAAGTGGAGCAGAGTCCGATCATACTCTGCCCCATTCCGCTACCAGGGCGGCCATGTTGGTCAGAATCAATACTCTTCTTCAGGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAACCATAATGTCACTCCTTGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTGTCTTATATTGCAGGATTGCTCACTGGCCGACCCAACTCGAAAGCGGTTGGTCCAAATGGAGAACGTCTTGATGCAAAGGAGGCTTTCCAACAAGCTGATATTCCTTCTGGGTTCTTTGAGTTGCAGCCTAAGGAAGGGTTGGCTCTTGTCAATGGCACTGCTGTTGGCTCTGGATTGGCTTCAATTGTTCTGTTTGAGGCTAATATTTTGGCTGTTTTGTCTGAGATTTTGTCTGCCATCTTTGCTGAAGTGATGCAAGGCAAGCCTGAATTCACTGACCATTTGACCCATAAGTTGAAGCATCATCCTGGTCAAATTGAGGCAGCTGCAATCATGGAGCACATTTTGGATGGGAGTTCTTACATGAAAACGGCTCAGAAGTTACACGAAATGGATCCCCTCCAAAAGCCCAAGCAAGACCGTTACGCTCTTAGAACTTCACCCCAGTGGTTGGGTCCATTAATTGAAGTCATTCGTTTCTCGACAAAGTCAATTGAGCGAGAGATCAATTCAGTGAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCTATTCATGGAGGTAACTTCCAAGGAACTCCCATCGGAGTATCCATGGACAACACTCGTCTGGCCGTTGCTTCAATCGGAAAGCTCATGTTTGCCCAATTCTCAGAACTTGTGAATGATTTCTACAACAACGGGCTACCTTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTGGATTATGGGTTCAAAGGTGCGGAGATTGCCATGGCTTCCTATTGCTCCGAGCTTCAATATCTAGCAAACCCCGTAACAAGTCATGTCCAAAGTGCCGAGCAACACAATCAAGATGTCAACTCTCTCGGTTTGATTTCTTCCAGAAAAACCGCTGAGGCAATTGACATTTTAAAACTAATGTGTTCCACGTTTTTGGTTGCTCTATGCCAAGCAATTGACTTGAGACATTTGGAGGAAAACTTGAAGAGCACCGTGAAGAGCACAGTAAGTCAAGTAGCCAAGAAAGTTCTCACCACAGGTACTAACGGTGCACTTCACCCATCAAGGTTTTGCGAGAAAGATTTACTAAAAGTGGTGGACAGAGAATACACCTTCGCCTATGTGGATGATGCATGCAGTGCCACTTACCCATTGATGCAAAAACTGAGACAAGTTCTTGTGGAGCACGCTTTGAAAAATGGGGAAGATGAGAAGAACACAAGCACTTCAATCTTTCAAAAGATTGGAGTTTTCGAAGAGGAACTGAAAGCCATGTTGCCCAAAGAAGTGGAAAATGCGAGACTATCGTATGAAAACGGAACGTCAGCCATTGAGAACCAAATTAAAGAATGCAGATCTTATCCGCTATACAAATTTGTGAGGGAAGAGCTAGGAACGGGGTTACTGACCGGAGAGAAAGTGATATCTCCCGGAGAAGAATGTGAAAAGGTATTCACAGCTCTTTGCCAAGGAAAGATGATCGACCCAATTCTCGAGTGTTTGAAGGAATGGAATGGTGCTCCAATCCCCATTTGCTAG 2118 45.99 MAPIEPISQTSTIDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGQTLTISQVAAIATRDSDVTVELSESSRAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGERLDAKEAFQQADIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAQKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMCSTFLVALCQAIDLRHLEENLKSTVKSTVSQVAKKVLTTGTNGALHPSRFCEKDLLKVVDREYTFAYVDDACSATYPLMQKLRQVLVEHALKNGEDEKNTSTSIFQKIGVFEEELKAMLPKEVENARLSYENGTSAIENQIKECRSYPLYKFVREELGTGLLTGEKVISPGEECEKVFTALCQGKMIDPILECLKEWNGAPIPIC 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9485339 9487456 + CmoCh03G012270.1 Cmo03g01227 378690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01227 705 CDD PAL-HAL 50 515 IPR001106 -
Cmo03g01227 705 Pfam Aromatic amino acid lyase 52 525 IPR001106 -
Cmo03g01227 705 Gene3D Fumarase/aspartase (Central domain) 252 700 - -
Cmo03g01227 705 Gene3D - 518 639 IPR023144 -
Cmo03g01227 705 PANTHER HISTIDINE AMMONIA-LYASE 10 705 IPR001106 -
Cmo03g01227 705 SUPERFAMILY L-aspartase-like 14 705 IPR008948 GO:0003824
Cmo03g01227 705 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 187 203 IPR022313 GO:0016841
Cmo03g01227 705 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 10 705 - -
Cmo03g01227 705 Gene3D - 6 251 IPR024083 -
Cmo03g01227 705 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 14 695 IPR005922 GO:0005737|GO:0006559|GO:0016841
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01227 Cmo-Chr3:9485339 Cmo03g01229 Cmo-Chr3:9493071 0 dispersed
Cmo18g00900 Cmo-Chr18:10253900 Cmo03g01227 Cmo-Chr3:9485339 0 dispersed
Cmo03g01227 Cmo-Chr3:9485339 Cmo03g01228 Cmo-Chr3:9488952 0 tandem
Cmo20g00532 Cmo-Chr20:2588734 Cmo03g01227 Cmo-Chr3:9485339 0 wgd
Cmo03g01227 Cmo-Chr3:9485339 Cmo07g00947 Cmo-Chr7:4554243 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01227 K10775 - csv:101218144 1323.53