Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01228 ATGGCAGCTATTCAGGAGATTGAAGGCAGCTTGTGCCAAACCCCTAATGATCCACTCAACTGGGGGCTCGCTGCCGATTCCCTCAAGGGAAGTCATCTTGATGAGGTGAAGCGCATGGTGGAGGAGTACCGGAGGCCCCTTGTCAAGCTTGGTGGTCAAACCCTCACCATTTCCCAAGTGGCTGCCATTGCTACTAGGGACTCCGATGTTACTGTCGAGCTTTCTGAGTCTTCCAGAGCTGGTGTTAAGGCCAGTAGTGATTGGGTTATGGAGAGTATGAATAAGGGGACTGATAGCTATGGTGTTACTACTGGATTTGGTGCTACCTCCCATAGAAGAACCAACCAAGGTGGTGCTCTCCAAAAGGAGTTGATTAGGTTTTTGAATGCTGGCATTTTTGGAAGTGGAGCAGAGTCCGATCATACTCTGCCCCATTCCGCTACCAGGGCGGCCATGTTGGTCAGAATCAATACTCTTCTTCAGGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAACCATAATATCACTCCTTGCCTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTGTCTTATATTGCTGGATTGCTCACTGGCCGACCCAACTCGAAAGCGGTTGGTCCAAATGGAGAACGTCTTGATGCAAAGGAGGCTTTCCAACAAGCTGATATTCCTTCTGGGTTCTTTGAGTTGCAGCCTAAGGAAGGGTTGGCTCTTGTCAATGGCACTGCTGTTGGCTCTGGATTGGCTTCTATTGTTCTGTTTGAGGCTAATATTTTGGCTGTTTTGTCTGAGATTTTGTCTGCCATCTTTGCTGAAGTGATGCAAGGCAAACCTGAATTTACTGACCATTTGACCCATAAGTTGAAACATCATCCCGGTCAAATCGAGGCAGCTGCAATCATGGAACACATTTTGGATGGGAGTTCTTACATGAAAACGGCCCAGAAGTTACACGAAATGGATCCCCTCCAAAAGCCCAAGCAAGACCGTTACGCGCTTAGAACTTCACCCCAGTGGTTAGGTCCATTAATTGAAGTCATTCGTTTCTCGACAAAGTCAATTGAGCGAGAGATCAATTCAGTGAACGACAACCCTTTGATTGATGTCTCAAGGAACAAGGCTTTGCATGGAGGCAACTTCCAAGGAACCCCAATCGGAGTATCCATGGACAACACTCGTCTGGCCATTGCTTCAATTGGAAAACTCATTTTTGCACAATTTTCAGAGCTTGTGAATGATTTCTACAACAACGGGCTCCCTTCAAATCTCTCTGCAAGTAGAAACCCAAGTTTGGATTACGGATTCAAAGGCGCCGAGATTGCCATGGCTTCCTATTGCTCTGAGCTTCAATATCTTGCAAACCCCGTTACAAGTCACGTCCAAAGTGCTGAGCAACACAATCAAGATGTCAACTCTCTTGGTTTAATCTCATCAAGGAAAACAGCCGAGGCAATTGACATTTTAAAACTAATGTGTTCCACGTTTTTGGTTGCTCTATGTCAAGCAATTGACTTGAGACATTTGGAGGAGAACTTGAAGAGCACCGTGAAGAGCACAGTGAGTCAAGTAGCCAAGAAAGTTCTCACCACAGGTACTAACGGTGCACTTCACCCATCAAGGTTTTGCGAGAAAGATTTACTAAAAGTGGTGGACAGAGAATACACCTTCGCCTATGTCGATGACGCATGCAGTGCCACATACCCATTGATGCAAAAACTGAGACAAGTTCTTGTGGAGCACGCACTCGCAAATGGTGATGGCGAACACAACACAAACACTTCAGTCTTCCTAAAGATTGCTGCTTTTGAAGAGGAATTGAAGGGTGTGTTACCAAAGGATGTTGAAAATACAAGGTTAGCATATGAGAGCGGAAATGCACAAATTAAGAACCAAATTGAAGAATGCAGATCTTACCCATTATATAGATTTGTGAGGAAGGAATTGGGAACAAATTTGGTAACAGGTGAAAAAGTGATATCTCCCGGGGAAGAATGCGAGAAGGTATTCACGGCTTTGTGTCAAGGAAAGATGATTGATTCTATCTTAGAATGTTTGAAGGAGTGGAATGGGGCGCCAATCCCCATATGTTAG 2127 45.23 MAAIQEIEGSLCQTPNDPLNWGLAADSLKGSHLDEVKRMVEEYRRPLVKLGGQTLTISQVAAIATRDSDVTVELSESSRAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGERLDAKEAFQQADIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAQKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMCSTFLVALCQAIDLRHLEENLKSTVKSTVSQVAKKVLTTGTNGALHPSRFCEKDLLKVVDREYTFAYVDDACSATYPLMQKLRQVLVEHALANGDGEHNTNTSVFLKIAAFEEELKGVLPKDVENTRLAYESGNAQIKNQIEECRSYPLYRFVRKELGTNLVTGEKVISPGEECEKVFTALCQGKMIDSILECLKEWNGAPIPIC 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9488952 9491078 - CmoCh03G012280.1 Cmo03g01228 378691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01228 708 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 14 708 - -
Cmo03g01228 708 CDD PAL-HAL 53 518 IPR001106 -
Cmo03g01228 708 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 17 698 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cmo03g01228 708 Pfam Aromatic amino acid lyase 55 528 IPR001106 -
Cmo03g01228 708 Gene3D - 521 642 IPR023144 -
Cmo03g01228 708 Gene3D Fumarase/aspartase (Central domain) 255 703 - -
Cmo03g01228 708 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 190 206 IPR022313 GO:0016841
Cmo03g01228 708 SUPERFAMILY L-aspartase-like 17 708 IPR008948 GO:0003824
Cmo03g01228 708 Gene3D - 9 254 IPR024083 -
Cmo03g01228 708 PANTHER HISTIDINE AMMONIA-LYASE 14 708 IPR001106 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01228 Cmo07g00951 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01228 Cmo-Chr3:9488952 Cmo07g00955 Cmo-Chr7:4642556 0 dispersed
Cmo07g00947 Cmo-Chr7:4554243 Cmo03g01228 Cmo-Chr3:9488952 0 dispersed
Cmo03g01227 Cmo-Chr3:9485339 Cmo03g01228 Cmo-Chr3:9488952 0 tandem
Cmo03g01228 Cmo-Chr3:9488952 Cmo03g01229 Cmo-Chr3:9493071 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01228 K10775 - csv:101218617 1295.03