Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01229 ATGGCACCCAGCCAGCAAAATAATGACACTTTCTGCACCATTACTGCTCATCACCCCGACCCACTTAACTGGGGCCTCGCTGCCGACTCCCTCAAGGGAAGCCATCTCGACGAGGTCAAGCGCATGGTGGAGGAGTACCGGAGGCCCCTTGTCAAGCTTGGCGGTCAAACCCTCACCATTTCCCAAGTGGCTGCCATTGCTACTAGGGACTCTGATGTTACTGTCGAGCTTTCTGAGTCTTCCAGAGCTGGTGTTAAGGCCAGTAGTGATTGGGTTATGGAGAGTATGAATAAGGGGACTGATAGCTATGGTGTTACTACTGGATTTGGTGCTACCTCCCATAGAAGAACCAACCAAGGTGGTGCTCTCCAAAAGGAGTTGATTAGGTTTTTGAATGCTGGCATTTTTGGAAGTGGAGCAGAGTCCGATCATACTCTGCCCCATTCTGCTACCAGGGCGGCCATGTTGGTCAGAATCAATACTCTTCTTCAGGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATCACCAAACTCTTGAACCATAATATCACTCCTTGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTGTCTTATATTGCTGGATTGCTCACTGGCCGACCCAACTCGAAAGCGGTTGGTCCAAATGGAGAACGTCTTGATGCAAAGGAGGCTTTCCAACAAGCTGATATTCCTTCTGGGTTCTTTGAGTTGCAGCCTAAGGAAGGGTTGGCTCTTGTCAATGGCACTGCTGTTGGCTCTGGATTGGCTTCTATTGTTCTGTTTGAGGCTAATATTTTGGCTGTTTTGTCTGAGATTTTGTCTGCCATCTTTGCTGAAGTGATGCAAGGCAAGCCTGAATTCACTGACCATTTGACCCATAAGTTGAAGCATCATCCTGGTCAAATTGAGGCAGCTGCAATCATGGAGCACATTTTGGATGGGAGTTCTTACATGAAAACGGCCCAGAAGTTACACGAAATGGATCCCCTCCAAAAGCCCAAGCAAGACCGTTACGCTCTTAGAACTTCACCCCAGTGGTTGGGTCCATTAATTGAAGTCATTCGTTTCTCGACAAAGTCAATTGAGCGAGAGATCAATTCAGTGAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCTATTCATGGAGGGAACTTCCAAGGAACTCCCATCGGAGTATCCATGGACAACACTCGTCTGGCCGTTGCTTCAATCGGAAAGCTCATGTTTGCCCAATTCTCAGAACTTGTGAATGATTTCTACAACAACGGGCTACCTTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTGGATTATGGGTTCAAAGGTGCGGAGATTGCCATGGCTTCCTATTGCTCCGAGCTTCAATATCTAGCAAACCCCGTAACAAGTCATGTCCAAAGTGCTGAGCAACACAATCAAGATGTCAACTCTCTCGGTTTGATTTCTTCCAGAAAAACCGCTGAGGCAATTGACATTTTAAAACTCATGTGTTCCACGTTTTTGGTTGCTCTATGCCAAGCAATTGACTTGAGACATTTGGAGGAAAACTTGAAGAGCACCGTGAAGAGCACAGTAAGTCAAGTAGCCAAGAAAGTTCTCACCACAGGTACTAACGGTGCACTTCACCCATCAAGGTTTTGCGAGAAAGATTTACTAAAAGTGGTGGACAGAGAATACACCTTCGCCTATGTGGATGATGCATGCAGTGCCACTTACCCATTGATGCAAAAACTGAGACAAGTTCTTGTGGAGCACGCTTTGAAAAATGGGGAAGATGAGAAGAACACAAGCACTTCAATCTTTCAAAAGATCGGAGTTTTCGAGGAGGAACTAAAAGCCATGTTGCCCAAAGAAGTGGAAAATGCGAGAGTATCGTATGAAAACGGAACGTCAGCCATTGAGAACCAAATTAAAGAATGCAGATCTTATCCGCTATACAAATTTGTGAGGGAAGAGCTAGGAACAGGGTTGCTGACCGGAGAGAAGGTGATATCTCCGGGAGAGGAATGTGAAAAGGTATTCACAGCTCTTTGCCAAGGAAAGATGATCGACCCAATTCTCGAATGTTTGAATGAATGGAATGGTGCTCCAATTCCCATCTGCTAG 2136 46.02 MAPSQQNNDTFCTITAHHPDPLNWGLAADSLKGSHLDEVKRMVEEYRRPLVKLGGQTLTISQVAAIATRDSDVTVELSESSRAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNAGIFGSGAESDHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGERLDAKEAFQQADIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAQKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMCSTFLVALCQAIDLRHLEENLKSTVKSTVSQVAKKVLTTGTNGALHPSRFCEKDLLKVVDREYTFAYVDDACSATYPLMQKLRQVLVEHALKNGEDEKNTSTSIFQKIGVFEEELKAMLPKEVENARVSYENGTSAIENQIKECRSYPLYKFVREELGTGLLTGEKVISPGEECEKVFTALCQGKMIDPILECLNEWNGAPIPIC 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9493071 9495206 - CmoCh03G012290.1 Cmo03g01229 378692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01229 711 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 193 209 IPR022313 GO:0016841
Cmo03g01229 711 PANTHER HISTIDINE AMMONIA-LYASE 16 711 IPR001106 -
Cmo03g01229 711 Gene3D - 11 257 IPR024083 -
Cmo03g01229 711 CDD PAL-HAL 56 521 IPR001106 -
Cmo03g01229 711 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 16 711 - -
Cmo03g01229 711 Pfam Aromatic amino acid lyase 58 531 IPR001106 -
Cmo03g01229 711 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 20 701 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cmo03g01229 711 SUPERFAMILY L-aspartase-like 20 711 IPR008948 GO:0003824
Cmo03g01229 711 Gene3D - 524 645 IPR023144 -
Cmo03g01229 711 Gene3D Fumarase/aspartase (Central domain) 258 706 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01227 Cmo-Chr3:9485339 Cmo03g01229 Cmo-Chr3:9493071 0 dispersed
Cmo03g01229 Cmo-Chr3:9493071 Cmo07g00956 Cmo-Chr7:4648520 0 dispersed
Cmo03g01228 Cmo-Chr3:9488952 Cmo03g01229 Cmo-Chr3:9493071 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01229 K10775 - csv:101218144 1337.78