Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01233 ATGGAGATGGGATCAGTCACAGTAAGATTCGAAGAGGAAGAGCTTGAAAATGGTGAATCAGAGAGGAGGAGAAAGAGAGGGAGAAGGAAGGATGCGGAGGATGGAATGGTATTAGATCCAAGACTGCCCATATTGAACGCATGGAACAGGATTTTTCTGGTGGCTTGTCTGGTTTCACTATTTGTGGACCCTCTCTTCTTCTTCCTGCCCCTTGTCAACACCGAGGACGTCTGCGTCGAAACCAGCCGAGGGCTCGCCGTGGCGCTGACCGTGGTTCGATCCATGGCGGATGTGTTCTACATAACCCACATAGTGGTGAGGTTTAGGACTGCTTATGTAGCTCCCTCCTCCAGGATCTTTGGAAGAGGGGAGCTCGTCAGTCTCCCTTCTAAGATTGCTGCCAACTATCTTGGTTTCGAGTTTTGGCTTCATTTCGCTGCTGCTTTGCCTCTTCCACAGGCATTCATATGGGCTGCAATCCCAAACATGATGAGGGGTTCAAACATGAGCCCATGGAGTTACTTTGTTCGGTTCTCCATTCTGTTCCAGTACCTGTTGAGGCTGTATCTCATCTTCCCTCTATCTGAACAGATCATTAAGGCCACTGGAGCTCTGATGAAAACGGCATGGGCTGGAGCTGTCTATAACCTAATGCTGTTCATGCTTGCAAGCCACGTTTTGGGGTCGTGTTGGTACCTTTTATCCATAGGACGACAAATGGAATGCTGGAAAAAGGTTTGCAGCTTGGGGGAGGTGGATTGCGGATATGGGTTCTTTAGTTGTAAGGCTGGCGTGGGAGATCCAAGCAGAGGTGCTTGGTTTGAAGCAACCAATGTTTCAAATCTTTGTCATCCAAGTGCCACCACTTTCTTCCATTTTGGCATCTTTTCTGATTCTTTTGCATCAACTTCTTCCTCCTTTTTCAGTAGGTACTTCTACTGTTTTTGGTGGGGGCTCAGGAATTTAAGCTCTCTAGGACAAAATTTGCTAACAAGTAGCAATGTGGGAGAGATTAATTTCGCCATTGTGATTGCGATTGTGGGCTTGGTTCTTTTCGCTCTTCTTATTGGAAATATGCAAACTTACCTCCAATCGACGACAATGAGGCTAGAAGAGTGGAGGGTGCGGCGGAGAGACACAGAGCAATGGATGCAGCACAGGCAGCTGCCATACGAACTGAAGCAAAGCGTGAGAAAATACGAGCAATTCAGATGGATGGCAACCCATGGGGTAAACGAAGAAGACATCCTCAAAGGCCTTCCTCTGGACCTCCGACGGGACATCAAGCGCCATCTCTGCCTCGATCTCGTCCGCCAGGTTCCCCTGTTCGACGAAATGGAGGAGAGAATGTTGGACGCTATATGCGAAAGGTTGAGACCCTGTTTAAGCACTACCAATACCTGCTTGGTCCGGGAAGGCGACCCAGTCAACGAGATGCTGTTTATAATCCGTGGCCATTTGGATTCCCACACCACGAATGGCGGCCGGACTGGGTTCTTCAATTCGAGCCGTCTCGGGCCGAGTGACTTCTGTGGCGAGGAGCTACTTCCATGGGCGTTGGACCCTGGAGCAGCCGCGGTGCTACCGTCGTCGACTCGCACTGTGAAGGCCGTGACGGAAGTGGAAGGGTTCGCGCTCATTGCGGAGGATTTGAAATTCGTGGCGGCTCAGTTCCGGAGGCTTCACAGTAAGCAGCTTAGGTACACTTTCAGGTTCCACTCGCACCAGTGGCGGACGTGGGCGGCGTGCTTTATACAAGCAGCGTGGTTTAGATATAAGCGGCGGCGGAAGGAGGGGAAGAAGAATAACATTAATGTTGTTAGGAAGTATGCCGACAACTGTAGGAGGGTTGTCGGAGGTGGTGGTGGTGGTGGCAGTAGCCGGTGTTGTGATGGCGGCGAGATGAATGTCGTTCATGGGTCGCTGCAGAAGCCACTTGAACCTGATTTCTCGGTGGAACACAGATGA 1968 50.61 MEMGSVTVRFEEEELENGESERRRKRGRRKDAEDGMVLDPRLPILNAWNRIFLVACLVSLFVDPLFFFLPLVNTEDVCVETSRGLAVALTVVRSMADVFYITHIVVRFRTAYVAPSSRIFGRGELVSLPSKIAANYLGFEFWLHFAAALPLPQAFIWAAIPNMMRGSNMSPWSYFVRFSILFQYLLRLYLIFPLSEQIIKATGALMKTAWAGAVYNLMLFMLASHVLGSCWYLLSIGRQMECWKKVCSLGEVDCGYGFFSCKAGVGDPSRGAWFEATNVSNLCHPSATTFFHFGIFSDSFASTSSSFFSRYFYCFWWGLRNLSSLGQNLLTSSNVGEINFAIVIAIVGLVLFALLIGNMQTYLQSTTMRLEEWRVRRRDTEQWMQHRQLPYELKQSVRKYEQFRWMATHGVNEEDILKGLPLDLRRDIKRHLCLDLVRQVPLFDEMEERMLDAICERLRPCLSTTNTCLVREGDPVNEMLFIIRGHLDSHTTNGGRTGFFNSSRLGPSDFCGEELLPWALDPGAAAVLPSSTRTVKAVTEVEGFALIAEDLKFVAAQFRRLHSKQLRYTFRFHSHQWRTWAACFIQAAWFRYKRRRKEGKKNNINVVRKYADNCRRVVGGGGGGGSSRCCDGGEMNVVHGSLQKPLEPDFSVEHR 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9516122 9518578 + CmoCh03G012330.1 Cmo03g01233 378696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01233 655 PANTHER PROTEIN CNGC15A 30 652 - -
Cmo03g01233 655 PRINTS EAG/ELK/ERG potassium channel family signature 104 113 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo03g01233 655 PRINTS EAG/ELK/ERG potassium channel family signature 222 232 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo03g01233 655 PRINTS EAG/ELK/ERG potassium channel family signature 311 328 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo03g01233 655 PRINTS EAG/ELK/ERG potassium channel family signature 337 348 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo03g01233 655 PRINTS EAG/ELK/ERG potassium channel family signature 355 364 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo03g01233 655 PRINTS EAG/ELK/ERG potassium channel family signature 405 412 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo03g01233 655 MobiDBLite consensus disorder prediction 1 30 - -
Cmo03g01233 655 Pfam Ion transport protein 47 369 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo03g01233 655 SUPERFAMILY cAMP-binding domain-like 372 564 IPR018490 -
Cmo03g01233 655 Gene3D Jelly Rolls 440 560 IPR014710 -
Cmo03g01233 655 Gene3D - 56 366 - -
Cmo03g01233 655 SUPERFAMILY Voltage-gated potassium channels 46 364 - -
Cmo03g01233 655 ProSiteProfiles cAMP/cGMP binding motif profile. 442 527 IPR000595 -
Cmo03g01233 655 CDD CAP_ED 442 573 IPR000595 -
Cmo03g01233 655 SMART cnmp_10 442 573 IPR000595 -
Cmo03g01233 655 Gene3D Helix hairpin bin 369 433 - -
Cmo03g01233 655 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 30 652 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01233 Cmo-Chr3:9516122 Cmo11g00422 Cmo-Chr11:2075897 0 dispersed
Cmo20g00529 Cmo-Chr20:2559226 Cmo03g01233 Cmo-Chr3:9516122 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01233 K05391 - csv:101221856 936.021