Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01235 ATGATTACGTTTATGGATTCCAAAGAGAAATCGAAGGAGATGGACAAATGTTTAGATCCTCAGCTATGGCATGCCTGTGCGGGAGGAATGGTTCAAATGCCGCCGGTGAACGCCAGGGTTTTCTATTTTCCTCAAGGCCATGCCGAGCATGCTTGTGCCTCCCCAGTTGATTTCAGGACTTGTCCGAGGCTTCCTTCATATACCCTTTGCAGAGTCTCTGCTATCAAGTTCCTTGCGGATCCTGACACCGATGAGGTCTTTGCCAAACTTAGGTTGATACCCATAAATGGAAGTGAACTAGATTTTGATGATGGAATTGGGCGGCTTACTGGGTCTGTACAGGATAAGCCAACTTCGTTTGCAAAGACACTGACTCAGTCTGATGCTAACAATGGTGGGGGTTTCTCTGTTCCAAGGTATTGTGCAGAAACCATCTTCCCTCCGTTGGATTACTCTGCTGATCCGCCTGTTCAGACCATTCTTGCTAAGGATGTTCATGGCGAGACATGGAAATTCAGGCACATTTATAGGGGGACGCCTCGGCGGCATCTTTTGACCACTGGCTGGAGTAGTTTTGTTAACCATAAGAAGCTTGTTGCGGGGGATTCCATTGTGTTCTTGAGAGCTGAAAATGGTGATCTCTGCGTCGGGATTAGGCGGGCGAAGAGGGGAGCTGGAGATGGTCCAGACTTGTCGTGTGGATGGAATGGTGCAGTCCCTTATGGAGCTTTCTCTGCTAATGAAAGTCTTATGGGAAAGGGGAAAGTGAAGGCTGAATCAGTAATTGAAGCTGCTACACTTGCTGCAAATGGGCAGCCATTTGAAATAGTATTCTACCCAAGAGCTAGCACTCCTGAATTCTGTGTCAAGGCAGCACTGGTGAAAGCAGCATTGCAGATCCGGTGGTGCTCAGGTATGAGGTTCAAGATGGCCTTCGAAACCGAGGACTCGTCTCGTATTAGCTGGTTCATGGGTACCGTCAATTCCGTTCAGGTCGCTGACCCACTACGCTGGCCGGAGTCACCATGGAGGCTTCTTCTGGTTACTTGGGACGAACCAGATTTACTTCAGAATGTGAAACGCGTTAGCCCGTGGTTGGTCGAATCGGTATCGAACATGTCTCCCATACACATTGCCCCATTCTCATCTCCAAGGAAAAAGCTCAGACATCCACAACACCCTGATTTCCCCCTTGATAACCAGCCTCCTATGCCATTGTTCTCTAGTTATCTCCACGGTTCCGGCAGCCCTTTTGGTTGTCCTCCCGACAACAACTCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTTTGGTCTATCCTTATCAGATTTTCATCTCAGTAAACTGCACTCGGGTTTGTTTCCGATTGGTTATCGATCACCCGATCCAGCTGCTGAGTCAGCTACACTTTCTTGTAATGCAATGACTGAAAAGCCAAGTATGAGTGAAAATGTATCTTGCTTGCTAACCATGGCACATTCTACTCAAGCCTCGAAGAAATGCGACGGCATGAAGACTCCTCAACTAATACTTTTTGGTCGACCCATACTTACCGAATTGCATATGTCTCAAACCTACTCTGGCGATACTGTTTCCTCTGTTGGTACTGGAAATAGCTCACCAGATGGAAATGGAGATAGAACGGAGAAACGCGCTGATGGTTCTGGATCTTCTCTGCATCAACAACGTCCATTGGAAGGCTCGTCTTGCGAAAATTTCCAATGTTACAAGGACGATCGGCAAGAAGTCGAGCCTAACGTTGATCCAGGCCATTGTAAAGTCTTCATGGAATCAGAAGATGTAGGTCGCACCCTTGATCTTTCTTCACTTGGGTCTTATGAAGAATTGTACACACAACTTGGAAACATGTTTGAAATAGATAACTCAGAGACATTGAACCATGTCTTGTACCGTGATGTTTCCGGTGCTGTCAAGCACGTCGGCGACGAACAATTCAGCGACTTCATCAAAACAGCAAGAAGATTGACAATTCTATAG 1998 47.25 MITFMDSKEKSKEMDKCLDPQLWHACAGGMVQMPPVNARVFYFPQGHAEHACASPVDFRTCPRLPSYTLCRVSAIKFLADPDTDEVFAKLRLIPINGSELDFDDGIGRLTGSVQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPPLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSSFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGAGDGPDLSCGWNGAVPYGAFSANESLMGKGKVKAESVIEAATLAANGQPFEIVFYPRASTPEFCVKAALVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTVNSVQVADPLRWPESPWRLLLVTWDEPDLLQNVKRVSPWLVESVSNMSPIHIAPFSSPRKKLRHPQHPDFPLDNQPPMPLFSSYLHGSGSPFGCPPDNNSAGMQGARHAHFGLSLSDFHLSKLHSGLFPIGYRSPDPAAESATLSCNAMTEKPSMSENVSCLLTMAHSTQASKKCDGMKTPQLILFGRPILTELHMSQTYSGDTVSSVGTGNSSPDGNGDRTEKRADGSGSSLHQQRPLEGSSCENFQCYKDDRQEVEPNVDPGHCKVFMESEDVGRTLDLSSLGSYEELYTQLGNMFEIDNSETLNHVLYRDVSGAVKHVGDEQFSDFIKTARRLTIL 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9536729 9540185 + CmoCh03G012350.1 Cmo03g01235 378698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01235 665 SMART B3_2 120 222 IPR003340 GO:0003677
Cmo03g01235 665 MobiDBLite consensus disorder prediction 527 566 - -
Cmo03g01235 665 Pfam Auxin response factor 264 346 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo03g01235 665 Gene3D - 301 376 - -
Cmo03g01235 665 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677
Cmo03g01235 665 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 665 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo03g01235 665 CDD B3_DNA 119 220 IPR003340 GO:0003677
Cmo03g01235 665 Gene3D - 589 665 - -
Cmo03g01235 665 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677
Cmo03g01235 665 ProSiteProfiles PB1 domain profile. 589 665 IPR000270 GO:0005515
Cmo03g01235 665 Gene3D - 118 222 IPR015300 -
Cmo03g01235 665 MobiDBLite consensus disorder prediction 527 543 - -
Cmo03g01235 665 SUPERFAMILY DNA-binding pseudobarrel domain 115 222 IPR015300 -
Cmo03g01235 665 PANTHER AUXIN RESPONSE FACTOR 6 665 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01235 Cmo07g00959 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00900 Cmo-Chr2:5550636 Cmo03g01235 Cmo-Chr3:9536729 0 dispersed
Cmo03g01235 Cmo-Chr3:9536729 Cmo05g00504 Cmo-Chr5:2426640 6.68E-101 dispersed
Cmo15g00471 Cmo-Chr15:2129289 Cmo03g01235 Cmo-Chr3:9536729 0 wgd
Cmo20g00525 Cmo-Chr20:2533242 Cmo03g01235 Cmo-Chr3:9536729 0 wgd
Cmo03g01235 Cmo-Chr3:9536729 Cmo04g02692 Cmo-Chr4:19603016 0 wgd
Cmo03g01235 Cmo-Chr3:9536729 Cmo07g00959 Cmo-Chr7:4686626 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9464 PF02362 B3 7.40E-22 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01235 - - csv:101217039 1186.02