Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01238 ATGTCGTCTAACACTGTGTTTGAGCGCAGAAGCAATGGTGGGTTAGCCGCCACCGCCAAGGACTACCAAGACCCGCCGCCCGCCCCGTTAATTGACGCCGGGGAGTTCACTCAGTGGTCATTTTACAGAGCTATCACCGTCGAATTCGTCGCCACGCTTCTGTTCTTGTACGTTCTTGTTCTCACTGTGATTGGCTATGACACCCAGTCCGCCACCAATGTCTGCGGCGGCGTCGGCGTTTTGGGCATTGCCTGGGCCGTCGGCGGAATGATCTTCGTTCTTGTTTACTGCACCGCTGGAATTTCAGGCGAGTTTAGAGGGCATATTAACCCGGCGGTGACATTTGGGCTGTTCTTGGCTCGAAAAATCTCCCTAATCAGAGCTGTGTTTTACATTATGGCTCAATGTTTGGGCGCCATTTGTGGGTGTGCGTTGGCTAAATCATTCCAGAAGGCTTATTACGTTCGCTACAGAGGTGGAACCAATATACTCGCCGATGGGTACAGCATCACCACCGGCTTAGCCGCAGAGATCGCCGGAACTTTCATTCTTGTTTACACAGTCTTCTCCGCCACCGACCCCAAGAGAAACGCCAGAGATTCTCACGTCCCTGTTTTGGCGCCACTCCCAATTGGATTCGCGGTGTTTATAGTTCATTTAGCCACCATTCCGATCACCGGCACCGGCATCAACCCAGCTCGAAGCTTTGGAGCTGCAGTGATCTATAACAGAACGGAGGCCTGGGATCATCATTGGATCTTTTGGGTTGGGCCGTTCGTCGGAGCTGCCATTGCTGCAATTTATCATCAAGTCATAATTAGAGCAGGAGCTGTTAAAGCTCTTGGATCATTCAAAACTTCCTCCGCCCTATAA 873 51.66 MSSNTVFERRSNGGLAATAKDYQDPPPAPLIDAGEFTQWSFYRAITVEFVATLLFLYVLVLTVIGYDTQSATNVCGGVGVLGIAWAVGGMIFVLVYCTAGISGEFRGHINPAVTFGLFLARKISLIRAVFYIMAQCLGAICGCALAKSFQKAYYVRYRGGTNILADGYSITTGLAAEIAGTFILVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSFGAAVIYNRTEAWDHHWIFWVGPFVGAAIAAIYHQVIIRAGAVKALGSFKTSSAL 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9553475 9554739 - CmoCh03G012380.1 Cmo03g01238 378701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01238 290 CDD MIP 43 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01238 290 SUPERFAMILY Aquaporin-like 35 274 IPR023271 -
Cmo03g01238 290 Pfam Major intrinsic protein 36 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01238 290 PANTHER PLASMAMEMBRANE INTRINSIC PROTEIN 25 17 286 - -
Cmo03g01238 290 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 17 286 IPR034294 -
Cmo03g01238 290 Gene3D Glycerol uptake facilitator protein. 28 290 IPR023271 -
Cmo03g01238 290 TIGRFAM MIP: MIP family channel proteins 48 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01238 290 ProSitePatterns MIP family signature. 108 116 IPR022357 -
Cmo03g01238 290 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01238 290 PRINTS Major intrinsic protein family signature 212 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01238 290 PRINTS Major intrinsic protein family signature 43 62 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01238 290 PRINTS Major intrinsic protein family signature 127 146 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01238 290 PRINTS Major intrinsic protein family signature 176 194 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01238 290 PRINTS Major intrinsic protein family signature 252 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01238 Cmo07g00973 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01238 Cmo-Chr3:9553475 Cmo07g00973 Cmo-Chr7:4770232 1.66E-158 dispersed
Cmo03g01238 Cmo-Chr3:9553475 Cmo03g01239 Cmo-Chr3:9556212 1.13E-163 tandem
Cmo15g00466 Cmo-Chr15:2117137 Cmo03g01238 Cmo-Chr3:9553475 5.14E-09 wgd
Cmo20g00519 Cmo-Chr20:2483693 Cmo03g01238 Cmo-Chr3:9553475 4.67E-122 wgd
Cmo03g01238 Cmo-Chr3:9553475 Cmo04g02700 Cmo-Chr4:19632374 7.49E-153 wgd
Cmo03g01238 Cmo-Chr3:9553475 Cmo07g00971 Cmo-Chr7:4762813 2.91E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01238 K09872 - oeu:111378025 445.662