Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01239 ATGTCTAAGGATCTCGAAGCCGGTGGGTTCGCTACCAAGGACTACCAAGACCCACCACCAGCACCATTGATCGACGCCGACGAGTTCACTCAATGGTCTTTTTACAGAGCCATCATCGCCGAGTTCGTCGCCACGCTTTTGTTCTTGTACGTCACTGTTCTCACTGTCATTGGCTACAGTAACCAGTCCGACATCAAAAACGGCGGCCAAATCTGCGGCGGGGTCGGTATTCTTGGCATTGCTTGGGCATTCGGCGGCATGATTTTCGTCCTCGTTTACTGTACCGCTGGAATTTCCGGAGGCCACATTAACCCAGCGGTGACTTTTGGGTTGTTTTTGGCTCGGAAAGTGTCTTTGGTTAGAGCAATTCTTTACATGGCGGCTCAATGTTTGGGCGCCATTTGTGGGTGTGCTTTAGTGAAATCGTTCCAGAAGGCTCATTACAATGAGTACGGCGGTGGAGCCAATTCACTCGCCGATGGGTACAGCACCGGCACCGGCTTAGCCGCAGAGATCATCGGAACTTTCGTTCTTGTTTACACCGTCTTCTCCGCCACCGATCCCAAACGGAATGCCAGAGATTCTCACGTTCCTGTTTTGGCGCCACTCCCAATTGGGTTCGCGGTGTTTATGGTTCATTTGGCCACCATTCCAATCACCGGCACCGGCATCAACCCAGCTCGAAGCTTTGGAGCCGCCGTGATCTTTAACAAAGACAAGCCATGGGATGACCAGTGGATCTTTTGGGTTGGCCCCTTCATTGGAGCTGCCATTGCTGCAATTTATCACCAAATCATACTGAGAGCAGGGGCAGTTAAAGCTCTGGGATCGTTCAGAAGTTCCACCTCCGTTTAA 855 51.7 MSKDLEAGGFATKDYQDPPPAPLIDADEFTQWSFYRAIIAEFVATLLFLYVTVLTVIGYSNQSDIKNGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYMAAQCLGAICGCALVKSFQKAHYNEYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKDKPWDDQWIFWVGPFIGAAIAAIYHQIILRAGAVKALGSFRSSTSV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9556212 9557668 - CmoCh03G012390.1 Cmo03g01239 378702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01239 284 CDD MIP 36 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01239 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 281 IPR034294 -
Cmo03g01239 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Cmo03g01239 284 PANTHER AQUAPORIN PIP2-4-RELATED 8 281 - -
Cmo03g01239 284 SUPERFAMILY Aquaporin-like 28 268 IPR023271 -
Cmo03g01239 284 Pfam Major intrinsic protein 29 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01239 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01239 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01239 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01239 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01239 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01239 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01239 284 TIGRFAM MIP: MIP family channel proteins 40 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01239 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00893 Cmo-Chr2:5507658 Cmo03g01239 Cmo-Chr3:9556212 1.60E-173 dispersed
Cmo03g01239 Cmo-Chr3:9556212 Cmo07g00973 Cmo-Chr7:4770232 0 dispersed
Cmo03g01241 Cmo-Chr3:9569816 Cmo03g01239 Cmo-Chr3:9556212 1.65E-157 dispersed
Cmo07g00972 Cmo-Chr7:4764962 Cmo03g01239 Cmo-Chr3:9556212 9.62E-08 dispersed
Cmo19g00753 Cmo-Chr19:7683024 Cmo03g01239 Cmo-Chr3:9556212 4.85E-156 dispersed
Cmo03g01238 Cmo-Chr3:9553475 Cmo03g01239 Cmo-Chr3:9556212 1.13E-163 tandem
Cmo03g01239 Cmo-Chr3:9556212 Cmo03g01240 Cmo-Chr3:9559511 0 tandem
Cmo03g01239 Cmo-Chr3:9556212 Cmo06g00371 Cmo-Chr6:1792397 4.19E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01239 K09872 - csv:101215366 538.88