Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01240 ATGGAAAGGAAAACAATTGATGACTTTGAACCAGGTCCACTTCCTTCGCCCAGGCAAGTAGACAGGTTTGGATTCTTAAAGCAGGAACACAATAGTTCTCCAGATGCTATAACCAAAATCAGGTCCACCCATGTACAGGAGAGGGAGGAAAGGAGAGTTAGAAAATGGAGGAAGATGATTGGAATTGGAGGGAGCGACTGGAAGCATTATGTTAGGAGAAAACCTCATGTTGTTAAAAGGCGTATAAGGAAAGGTATTCCCGATTGTTTAAGGGGTCTAGTTTGGCAGCTGATTTCTGGAAGTCGAGACTTACTGTTGATGAACCCTGGAGTTTATGAGCAATTGGTAATATATGAGACATCAGCTTCTGAACTGGATATTATTCGAGATATCTCTCGTACCTTTCCTTCACATGTTTTCTTCCAACAGAGACATGGACCTGGTCAGAGATCTCTCTACAATGTTTTAAAGGCATATTCAGTTTTTGATCGGAATGTCGGATACGTTCAGGGGATGGGATTTTTAGCTGGTTTGTTGCTTCTCTATATGAGTGAAGAGGATGCATTCTGGCTGTTGGTCGCATTACTTAAAGGTGCAGTTCATGCTCCTATGGAAGGATTGTATCTGGCGGGGCTTCCTCTAGTGCAGCAGTACCTATTTCAATTTGATAACCTTGTGAGAGAGCAGCTGCCCAAGCTTGGAGAGCATTTTACACAGGAAATGATAAATCCTAGCATGTACGCGAGCCAATGGTTTATTACCGTTTTCTCTTACTCTTTCCCCTTCCATTTGGCTCTACGAATTTGGGATGTCTTTCTTTATGAGGGTGTTACGATTGTTTTTAAAGTTGGTTTGGCTCTTCTAAAATATTGCCATGATGACTTGGTAAAGTTGCCCTTTGAAAAACTCATACATGCTTTGCGAAACTTCCCAGAAGATGCAATGGATCCAGATACATTATTGCCCATGGCTTACTCAATTAAAGTGTCCAAGCAGCTGGAGGAATCGAAACATCTGTATGAAACGAAGCATGGGAAGGAGATTCAGGATGATGCTAAAACTAGTGGGAAACAGGAGCAGGAGGATATTGAAGCCGGAGGGCGTGGTGGGTTTAGCGGCAAGGATTACCAAGACCCGCCGGCAGCGCCATTGATCGACGCACAGGAGTTTGCTCAGTGGTCATTTTACAGAGCCATTATAGCCGAGTTTGTTGCTACCCTTTTGTTCTTGTATGTCACTGTTCTCACTGTCATTGGGTATAAAGTTCAGAGTGATGTTGACAATGGAGGCCAGATTTGCGGCGGCGTCGGCATTTTGGGCATCGCTTGGGCCTTCGGCGGCATGATTTTTGTACTCGTTTACTGCACCGCCGGTATTTCCGGGGGACACATAAATCCGGCGGTGACATTTGGGCTGTTCTTGGCTCGGAAGGTGTCGTTGGTGAGAGCCGTATTATACATGGCGGCGCAGAGTTTGGGCGCCATTTGTGGGTGTGCGTTAGTGAAGGCATTCCAAAACGGCCACTACATTAAGTACGGCGGTGGAGCCAATTCGCTCGCTGACGGTTACAGCTCCGGCACCGGATTAGCCGCCGAGATCATCGGAACCTTCGTTCTCGTTTACACTGTGTTTTCCGCCACCGACCCGAAGAGAAATGCCAGAGACTCCCATGTTCCGGTTTTGGCGCCACTCCCAATTGGGTTCGCGGTGTTCATGGTTCACTTAGCCACGATTCCGATCACCGGCACCGGCATCAACCCAGCTAGAAGCTTCGGAGCTGCAGTGGTGTTCAACAAATCCAAGCCATGGGACGATCAATGGATGTTTTGGGTCGGACCCTTCATCGGAGCTGCCATTGCTGCAATTTACCATCAGTTCATATTAAGAGCAAGCGCCGGCAAGGCTCTGGGATCATTCACAAGCTCCTGA 1929 47.07 MERKTIDDFEPGPLPSPRQVDRFGFLKQEHNSSPDAITKIRSTHVQEREERRVRKWRKMIGIGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISGSRDLLLMNPGVYEQLVIYETSASELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVFDRNVGYVQGMGFLAGLLLLYMSEEDAFWLLVALLKGAVHAPMEGLYLAGLPLVQQYLFQFDNLVREQLPKLGEHFTQEMINPSMYASQWFITVFSYSFPFHLALRIWDVFLYEGVTIVFKVGLALLKYCHDDLVKLPFEKLIHALRNFPEDAMDPDTLLPMAYSIKVSKQLEESKHLYETKHGKEIQDDAKTSGKQEQEDIEAGGRGGFSGKDYQDPPAAPLIDAQEFAQWSFYRAIIAEFVATLLFLYVTVLTVIGYKVQSDVDNGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMAAQSLGAICGCALVKAFQNGHYIKYGGGANSLADGYSSGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVVFNKSKPWDDQWMFWVGPFIGAAIAAIYHQFILRASAGKALGSFTSS 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9559511 9568720 - CmoCh03G012400.1 Cmo03g01240 378703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01240 642 MobiDBLite consensus disorder prediction 344 364 - -
Cmo03g01240 642 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 211 330 IPR035969 -
Cmo03g01240 642 MobiDBLite consensus disorder prediction 1 20 - -
Cmo03g01240 642 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 2 346 - -
Cmo03g01240 642 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 111 197 - -
Cmo03g01240 642 Pfam Major intrinsic protein 390 624 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01240 642 SUPERFAMILY Aquaporin-like 389 629 IPR023271 -
Cmo03g01240 642 Pfam Rab-GTPase-TBC domain 88 295 IPR000195 -
Cmo03g01240 642 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 67 236 IPR035969 -
Cmo03g01240 642 SMART tbc_4 82 299 IPR000195 -
Cmo03g01240 642 TIGRFAM MIP: MIP family channel proteins 401 623 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01240 642 Gene3D - 49 101 - -
Cmo03g01240 642 ProSitePatterns MIP family signature. 463 471 IPR022357 -
Cmo03g01240 642 MobiDBLite consensus disorder prediction 344 372 - -
Cmo03g01240 642 Gene3D - 202 350 - -
Cmo03g01240 642 ProSiteProfiles TBC/rab GAP domain profile. 85 276 IPR000195 -
Cmo03g01240 642 CDD MIP 397 627 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01240 642 PRINTS Major intrinsic protein family signature 397 416 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01240 642 PRINTS Major intrinsic protein family signature 607 627 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01240 642 PRINTS Major intrinsic protein family signature 567 589 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01240 642 PRINTS Major intrinsic protein family signature 482 501 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01240 642 PRINTS Major intrinsic protein family signature 531 549 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01240 642 PRINTS Major intrinsic protein family signature 445 469 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01240 642 Gene3D Glycerol uptake facilitator protein. 382 642 IPR023271 -
Cmo03g01240 642 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 2 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01240 Cmo-Chr3:9559511 Cmo07g00974 Cmo-Chr7:4771433 0 dispersed
Cmo15g00466 Cmo-Chr15:2117137 Cmo03g01240 Cmo-Chr3:9559511 1.12E-10 dispersed
Cmo20g00519 Cmo-Chr20:2483693 Cmo03g01240 Cmo-Chr3:9559511 7.23E-124 dispersed
Cmo20g00667 Cmo-Chr20:3251481 Cmo03g01240 Cmo-Chr3:9559511 6.48E-34 dispersed
Cmo03g01239 Cmo-Chr3:9556212 Cmo03g01240 Cmo-Chr3:9559511 0 tandem
Cmo03g01240 Cmo-Chr3:9559511 Cmo03g01241 Cmo-Chr3:9569816 8.06E-147 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01240 K20242 - csv:101215120 687.567