Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01241 ATGTCTAAGGATGTTGAAGCCGGAATCCGCGGCGGGTTTTCCGCCGGGGACTACCTCGATCAGCCTCCGGCTCCGTTTTTCGACACCAACGAGCTTTCCCGGTGGTCGTTTTACAGGGCCATCATCGCTGAGTTCATTGCCACGCTTTTGTTTCTCTACGTCGGAGTGCTCACTGTGATTGGAAACCAGAGGCAGTCTTCTGCCTCCGCCTGCGGCGGCGTTGGCGTTCTGGGTATCGCTTGGGCGTTCGGTGGCACCATCTTCGTTCTCGTTTACTGTACCGCCGGCATTTCTGGAGGACATATAAACCCAGCAGTGACATTTGGGCTGTTTATGGGTCGGAAAGTTTCGTTGGTCCGAGCCGTACTGTACATAGCGGCTCAGTGTTTGGGAGCCATTTGTGGGTGTGGGCTGGTGAAGTTATTAAAGAAGGCTAACTTTAATGACCTCGGCGGTGGAGCCACCGAGCTCGCCGACGGTTTCAGTCCCGGCGCCGGCCTGGCCGCCGAGATCATCGGAACCTTCGTTCTTGTATACACCGTCTTCTCTGCCACCGATCCGAAGAGAAAAGCCAGAGATTCCCACGTTCCGGTTCTAGCGCCGCTGCCAATTGGGTTTGCCGTGTTCGTGGTGAATTTGGCCACTATTCCGGTCACCGGCGCCGGCATTAACCCAGCTCGAAGCTTCGGCTCTGCAGTGATGTTCAACAAACACAAAGCTTGGGATAACCACTGGATATTCTGGGCCGGACCTTTCATCGGAGCTGCAATGGCTGCAATTTACCATGAATTTGTTCTGAGAGGAGGAGCTGCGAAGACCTTGAGATCCTTCCGGAGTTCCTCAATTTAA 849 54.65 MSKDVEAGIRGGFSAGDYLDQPPAPFFDTNELSRWSFYRAIIAEFIATLLFLYVGVLTVIGNQRQSSASACGGVGVLGIAWAFGGTIFVLVYCTAGISGGHINPAVTFGLFMGRKVSLVRAVLYIAAQCLGAICGCGLVKLLKKANFNDLGGGATELADGFSPGAGLAAEIIGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFVVNLATIPVTGAGINPARSFGSAVMFNKHKAWDNHWIFWAGPFIGAAMAAIYHEFVLRGGAAKTLRSFRSSSI 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9569816 9570894 + CmoCh03G012410.1 Cmo03g01241 378704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01241 282 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 280 IPR034294 -
Cmo03g01241 282 CDD MIP 39 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01241 282 TIGRFAM MIP: MIP family channel proteins 43 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01241 282 SUPERFAMILY Aquaporin-like 31 267 IPR023271 -
Cmo03g01241 282 Pfam Major intrinsic protein 31 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01241 282 ProSitePatterns MIP family signature. 101 109 IPR022357 -
Cmo03g01241 282 PANTHER AQUAPORIN PIP2-1 6 280 - -
Cmo03g01241 282 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01241 282 PRINTS Major intrinsic protein family signature 83 107 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01241 282 PRINTS Major intrinsic protein family signature 120 139 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01241 282 PRINTS Major intrinsic protein family signature 169 187 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01241 282 PRINTS Major intrinsic protein family signature 205 227 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01241 282 PRINTS Major intrinsic protein family signature 245 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01241 282 Gene3D Glycerol uptake facilitator protein. 24 282 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01241 Cmo-Chr3:9569816 Cmo03g01239 Cmo-Chr3:9556212 1.65E-157 dispersed
Cmo18g00087 Cmo-Chr18:583155 Cmo03g01241 Cmo-Chr3:9569816 5.23E-34 dispersed
Cmo03g01240 Cmo-Chr3:9559511 Cmo03g01241 Cmo-Chr3:9569816 8.06E-147 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01241 K09872 - csv:101215842 500.36