Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01262 ATGGACGAAGAGGCTAATTCTTGGCTTAGGAGAACCAAGTTTTCGCACACAGTTTATCATCGATGGGACTCATTAAGATTGAACCCTGTTCCTTTCGTCGTCGAACCACCACCTCGGAATTACGGCTTGAAATCGAGGCCTCAATCAGCTTCATCCGCCCAGAAACCAAATCCTGATATCTCAAAGATTCAGCGAAATTTCATAGCCAACAAACAGAGGTCTCTGTCTCCTCTTCCCGAGAGCAACCTCTCTGAAGTTTTCAAGGAAGCAAAATCCGCCAGTAAGAGATTCTCGACTCCAACGCCTCGACTTAGAGAACGAACTAGGGAATTCAAGAACAAGCTATTCAATAAGGACCCGCAAGATTCAAAATCGTCCACTTCCAAGACATCGTCGAATACCAGTCCCCTGAAACTCCTAGCTTCGGCCAAAGGGGGTGAAAAGTCAAAGTTCCGGAAGGACTCTTCCTGGACCAAATATTTCGATTCCGGTGGCGGAAAAGTCACAGCGGTCGAAACAGCCGACGACTGGAGCGTTGATCTATCCAAGCTGTTTGTTGGGTTAAGGTTCGCTCATGGAGCTCACAGTCGTCTTTATCATGGAAAATACAACGATGAACCTGTTGCTGTTAAACTCATTAGAGTGCCTGAGGACGACGATAGTGGAGCGCTTGCTTCTCGATTGGAGAAGCAATTCACCAGAGAAGTAACCCTTTTATCTCGTCTCCACCATCCTAATGTTTTAAAGTTTGTAGCTGCGTGTAGGAACCCACCAGTTTACTGTGTCATTACTGAATATTTGTCTCAAGGATCATTAAGGGCGTACTTGCTCAAACTCGAGCGCCAATCTCTCCCTTTGCAGAAACTAATTGAGTTCTCTTTAGATGTGGCTCGTGGCATGGAATACATTCATTCCCAAGGCATAATCCATCGGGATCTCAAGCCTGAGAACGTTCTTATTGATGAGGACTTCCACCTGAAAATTGCAGATTTTGGGATAGCTTGTCCTGAGGCCTTTTTTGACCCATTAGCCGATGATCCCGGAACGTATCGATGGATGGCACCGGAGATGATCAAACATAAACCCTATGGTCGAAAAGTTGATGTATACAGCTTTGGGCTCATGTTGTGGGAAATGGTGTCTGGTGCAATTCCTTACGAGGATATGACTCCCATTCAAGCAGCCTTTGCTGTTGTGAATAAGAATCTGAGGCCTGTTATCTCGAGCGATTGCCCGTTGGCAATGCGAGCTTTGATCGAGCAATGTTGGTCTGTGCAACCGGACAAGAGACCTGATTTCTGGCAGATTGTGAAGGTATTAGAGCAATTCGAAGCTTCGGTTGCCCGTGATGGGACACTGAGTTTAACGGGGAACCCGCGGTCGAGTTTCCAAGACCATAAGAAAGGGCTGCTCCATTGGATTCAAAAGCTTGGCCCTGGCCCCCTGCATCCTGAAACCTCATCCTCCTCGCCCGTGCCGAAACCGAAATTCTCGTAA 1497 47.09 MDEEANSWLRRTKFSHTVYHRWDSLRLNPVPFVVEPPPRNYGLKSRPQSASSAQKPNPDISKIQRNFIANKQRSLSPLPESNLSEVFKEAKSASKRFSTPTPRLRERTREFKNKLFNKDPQDSKSSTSKTSSNTSPLKLLASAKGGEKSKFRKDSSWTKYFDSGGGKVTAVETADDWSVDLSKLFVGLRFAHGAHSRLYHGKYNDEPVAVKLIRVPEDDDSGALASRLEKQFTREVTLLSRLHHPNVLKFVAACRNPPVYCVITEYLSQGSLRAYLLKLERQSLPLQKLIEFSLDVARGMEYIHSQGIIHRDLKPENVLIDEDFHLKIADFGIACPEAFFDPLADDPGTYRWMAPEMIKHKPYGRKVDVYSFGLMLWEMVSGAIPYEDMTPIQAAFAVVNKNLRPVISSDCPLAMRALIEQCWSVQPDKRPDFWQIVKVLEQFEASVARDGTLSLTGNPRSSFQDHKKGLLHWIQKLGPGPLHPETSSSSPVPKPKFS 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9665644 9667871 - CmoCh03G012620.1 Cmo03g01262 378725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01262 498 MobiDBLite consensus disorder prediction 38 60 - -
Cmo03g01262 498 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 3 468 - -
Cmo03g01262 498 MobiDBLite consensus disorder prediction 482 498 - -
Cmo03g01262 498 MobiDBLite consensus disorder prediction 100 119 - -
Cmo03g01262 498 Pfam Protein tyrosine and serine/threonine kinase 191 440 IPR001245 GO:0004672|GO:0006468
Cmo03g01262 498 Gene3D Phosphorylase Kinase; domain 1 172 268 - -
Cmo03g01262 498 SMART serkin_6 184 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01262 498 CDD STKc_MAP3K-like 191 440 - -
Cmo03g01262 498 MobiDBLite consensus disorder prediction 44 60 - -
Cmo03g01262 498 MobiDBLite consensus disorder prediction 479 498 - -
Cmo03g01262 498 MobiDBLite consensus disorder prediction 89 145 - -
Cmo03g01262 498 MobiDBLite consensus disorder prediction 120 139 - -
Cmo03g01262 498 SUPERFAMILY Protein kinase-like (PK-like) 170 440 IPR011009 -
Cmo03g01262 498 PANTHER TYROSINE KINASE FAMILY PROTEIN 3 468 - -
Cmo03g01262 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672|GO:0006468
Cmo03g01262 498 Gene3D Transferase(Phosphotransferase) domain 1 269 469 - -
Cmo03g01262 498 PRINTS Tyrosine kinase catalytic domain signature 264 277 IPR001245 GO:0004672|GO:0006468
Cmo03g01262 498 PRINTS Tyrosine kinase catalytic domain signature 302 320 IPR001245 GO:0004672|GO:0006468
Cmo03g01262 498 PRINTS Tyrosine kinase catalytic domain signature 348 358 IPR001245 GO:0004672|GO:0006468
Cmo03g01262 498 PRINTS Tyrosine kinase catalytic domain signature 367 389 IPR001245 GO:0004672|GO:0006468
Cmo03g01262 498 PRINTS Tyrosine kinase catalytic domain signature 411 433 IPR001245 GO:0004672|GO:0006468
Cmo03g01262 498 ProSiteProfiles Protein kinase domain profile. 184 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01262 Cmo-Chr3:9665644 Cmo07g00331 Cmo-Chr7:1551809 3.01E-113 dispersed
Cmo14g00693 Cmo-Chr14:3568346 Cmo03g01262 Cmo-Chr3:9665644 1.71E-74 dispersed
Cmo13g00659 Cmo-Chr13:6946045 Cmo03g01262 Cmo-Chr3:9665644 0 wgd
Cmo18g00354 Cmo-Chr18:2315755 Cmo03g01262 Cmo-Chr3:9665644 0 wgd
Cmo03g01262 Cmo-Chr3:9665644 Cmo07g00236 Cmo-Chr7:1172838 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74210 PF07714 PK_Tyr_Ser-Thr 2.80E-59 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01262 - - cmax:111478573 961.059