Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01285 ATGGGAGATTGGATTAGAGGTTTGCCTGTTCTCTTCCTTCGATCTTCATCTTTCAATTCCATGGAAGCTGCTGCCTCGGACGGCGAAAATCACAACCACAATAATGATGATATTAACAAAATTAGTAACTCAAGGGAGGGTCTTAGCAAGCCCAAGCGCCAGATGAAGACTCCCTTCCAGCTTGAAACCCTCGAGAAGGCCTATGCTTTGGACACGTACCCATCAGAGTCGACAAGGGCTGAACTGTCGGAGAAATTGGGGCTTACCGATCGGCAATTGCAGATGAGGTTGAAGGACAAGAAGGAACCGGCGAAGAAACCCCGGAAGGTGATGGCACCGGCGTTGCCTGATTCTCCCATTGACGAATTAAGAGTAGTGGCTGAGCCGGGTAGTGATTACGCTTCGGGGTCGGGCTCGGGTTCGAGTCCATTTGGTGATGTTGGGTTGCGTAATGTGGTACCTAGAAGTGTTGGAGATGATATGCCAATGATGAGAAGGTATTATGAACCTTCACGGTCTGTTATGGAACTTAGAGCTATTGCTTGCGTCGAATCGCAGTTAGGAGAGCCATTGAGGGAGGACGGACCTATTCTTGGGATTGAATTTGATTCACTACCACCTGATGCTTTCGGAGCACCTATAGTGGCAGAGCAGCAGAAGCGATCTGGCCATTCGTATGGGGAAAAATACGAACAACGGGATGCTAAATCAAATAAAGTGACTGCAAGGGGATTCACAGAATATCCATTTATGCCAGACCAATCTAATATTAGAGCTGATGCCTATGGTCCAGTTGCCCAACCACATTATCCAGACTCATTAGTTGAGGTTACAGCAGCCAGGACACCGTATTTGCTTGGTCATGAACAGCCGAACAGGAGCCACAATTACCATGGTCAGGTCTCAAGGGTTCGTCTTCTGTCTCAACAGGAGAAACAGGCAGTTACAATTCCATCTCCTGCTGAAGATAGCACGTGTGTCCCTCCAAGGGATTCTTTTGCAAGTATCAGAATGAATTCTCAGTTTACTGAACACCCAATTGTTGGACAAGAAAATTATGTGTTGGCTGATGGGCATGTTTTTCCAGAGGACGTCATGATTAGGATGGAAAGGAAACGCAAGAGTGAAGAAGCTCGTTTGAACAAAGAAGCTGAAGCCCATGAAATAAAAATGCGGAAAGAGCTTGAGAAACAAGATATTTTGAGGAAAAAGAGTGAAGAACGAATGAGGAGAGAAATGGAAAAGCAAGATCGCGAAAGAAGGAGAGAAGAGGAGAAGTTACTGCGAGAAAAGCAGCGGGAAGAGGAGAGATTGAAGCGTGAGGAAAGACGTGAACATGAACGGAAGGAGAAGTTTCTGCAGAGGGAGTATTTAAGGGCTGAAAAGAGGAGGCAAAAAGAAGCTATTCGCAAAGAAAAGGAAGCAGTGAGACGCCAAGCTGCTATTGAGAAGGCTACTGCTCGTAGGATTGCCCGTGAGTCTATGGAGCTTATTGAGGATGAACAGCTTGAACTGATGGAGCTGGCTGCTGCAAATAAAGGATTCTCCTCCATATTAAGTCTTGATCATGACACTTTGCAGAATCTTGAATCATTCCAAGATTATCTAGGTGCTTTTCCACCCAAGTCTGTGCAATTGAAAAAACCTTTCGGCATTCAGCCTTGGATCAATTCAGAGGAGAACATTGGCAACCTTCTCATGGTATGGAGATTTTTCATTACATTCTCTGATGTTCTTGAGCTATGGCCCTTTACCCTTGACGAGTTTGTGCAAGCTCTCCACGACTATGATTCAAGATTACTGGGTGAGATTCACATTTGTCTTCTGAGTCTGATTGTAAAAGATATCGAAGATGTTGCAAGAACACCTTCTGCTGGATTGGGAATAAATCAGAATGGTGTTGCCAACTCCGGAGGTGGACATCCTCAGATTGTTGAAGGGGCATATGCGTGGGGATTTGACATTTGCAACTGGCAGAAACATTTAAACCCATTAACATGGCCAGAAATATTTAGACAACTAGCACTATCAGCTGGATTTGGACCTCAGTTGAAGAAGAGGGGTTTGGCATGGTCTGAAATGCGTAGCAACGATGAGATAGTGAAGGGGCTATTCTGTTTGACTGTTAATACTAAAAAAATCTTTGATCGATCATTTGCATCAGCTACATATTCTGGATTCCAAGGCAATGCTAAATGTGGTGAGGATGTAGTTTCTACTCTCCGCAATGGTTCAGCAGCTGAAAATGCATTTGCTATCATGCAAGAGAAAGGTTTGCTAGCTCCTCGGAGATCTAGGCATCGGCTAACTCCTGGAACTGTCAAATTTGCTGCATTTCATGTCCTTTCACTAGAAGGAAGTGAGGGGTTAACAGTTCTAGAACTTGCTGAGAAGATACAGAGATCTGGACTTAGAGATCTGTCTACAAGCAAGACACCAGAGGCTTCCATTTCTGTTGCTTTGACAAGGGATACGAAGCTTTTTGAAAGAATTGCTCCTTCCACATATCGTGTGCGAGCTCCTTATAGGAAGGATCCAGATGATGCCGAGGAAATACTTTCAGTAGCCAGAAAGAAAATTCAGGTATTCCAAAATGGGTTTTTGGTTGGAGAAGATGCAGATGATGTTGAAAGAGACGAAGAATCTGAATGTGATGATGTTGATGAAGATCCTGAAGTTGATGATATGGCGACAACAGCTTTGGTGAATGAAGATGTTAGCAAAGGAGATGCTGACTTAGGAGTTGACAATGAGAATGTATGCCATGATATTGCTGGAAATCTACAAAATGCAGTTGCCAAAGATATACCGTCGTTCCCCCTAAGTGGCTCCAAGGACACAAAATATTTAAACATACCCACAGAGCAGTATGCTGCCATTGATGAGACTAATATTAGTGATCTTGATCAAGACAATATGGAGATTGATGAAAGCAAGGAAGGTGCATCATGGATTCAAGGACTTACAGAAGGTGAATATCATGATCTTAGTGTTGAGGAGCGCTTGAATGCCCTTATTGCCTTGACCAGCATTGCAAATGAAGGAAACTCTATTCGCCTTGTTCTTGAGGATCGTTTGGAAGCTGCCAATGCTGTTAAGAAGCAAATGTTGGCAGAGGCTCAGATTGATAAATCTCGTCTAAAAGAAGAGATCATTACTAAATCTGATTTTCCAATTCACATTGTGAGCAAAGTGGAAACTGAACACAATGGTTCCGCCATGGAGGGTGGGCAAAGCCCTTTTCCTGTTACTGAAAAGAAGAACGATGAAACAACCCCAAGCACTGTAGAAAACCTTGGTAATGTTTCTAATGAGAGGGCTACTTTAGTGCCAGATCTTTTCCCAGGCTCAGATAACTTTTTGGCTCAGCAATGTGGACATGCTTCAAAGAGGTCACGTTCACAGTTAAAATCTTATATTGCCCACAAAGCTGAAGAAATGTACACATACAGATCTTTGCCTCTTGGTCGAGATCGTAGGCATAATCGGTACTGGCAATTTGTTGCGTCCTCTTCAAGCAATGATCCTGGCTCTGGTAGAATCTTTGTTGAAATGTATGATGGAAAGTGGAGGCTTATTGATTCTGAAGAGAATGTGTCATTAGAGGAAGAGGAAGAGGAAGAGGAAGAAGAACTTGGCAGTTACTTTGTGAAACTTGTTAATACTTACGCACATGCTTTAGAATTTTCTCATGACTTTGATGCTCTTTCAATGGCTTTGGACACACGCGGGGTACATGTTCCGTTAGAAGCTTTTCAATCGTTCTGGACAGAACATAGGAAAGATTGGGGTGTCAGGATGAAATTATCACCATCTATTGAGGAGCTTCTACAGATATTAACCCTGTTTGAAAGTGCGGTTAAGCGAGACTTTCTAAAATCAGACTTTACTACAACAGACGAGCACCTGGGCTCATGTTCCGTCTCTGGGACTGTTACATCCGATATTGGGTCTGTTCCTACATTACCCTGGATTCCACGGACTAGTGCAGCTGTTGCTTTAAGGCTTTGTGAGGTAGATGCATCAATTTATTACATCGGGTGTGAGAAACCAGAGCCTGACCAGGATAAGGAAGTCGGAGAACATATAAACTTTTCCAACAGATATGTCCAGGTTAAGAATGAGGAGCGGACTAAACTAAACGACTTGGATTATGATGATCTAATGAAGAACGACAACTCAGCCAATCCAAAAGGTTTTAGGACCAGCTACAAACGCAGTCGAGGGAGTCGAGATTATGGACGCCGCAAAAAGTGGCAGAAAAAAGTTAACGGATCTAGATCTGGCCAAGTCCGGCAAAATGTCAAGAGTAACGAGAAGATGAATCAAGGACAGAGGGAGCTGGGACAAGGAACGCAAGTTATGGGCATACGGGGCCGCCGCACGGTAAGGAAGAGACGGGCTGAGAAGAGCATTCCAGATGAAGGACTGCTGGGGCTAATGCCTAGTAGTAGTGCTCATAACATAGATGAATCCCCAAAAGACTATCTTGGGGAATGGGAGGATGAAAAAATGGATAGATTCATGGATATGGAAGATGAAGAGGAGAATGTGATGGAAGATAAAGAGAATGTTATGGAAGATGAAGAGAATGAAGAGAATGAAGAGAACGTGAACAACAACGTGGAAGCAATGGAGTCGGAAGAGGATGGGCAGGGAGTTGTTGGGTATGAGGAAGGGGGTTGGGAATTTGGGTTTGAAGGCACCTCCAACTCCAATAGATGGAACAATGGTGATTTAGAGATGGGTAGCGATGAGGACGCGGATTTATCAGAGGACTACAATGGCACTGAAGAGGGGGGAAACGATGATATAGAGGAGGAATTAGATGTTGATGATACCAGCGAGGAGTCGGATTGTTCACCAAATAGGAGGAGGATAGTAGGCAACAACAATGGTGGTGCAGAATCCGCTGTTTCAGACGACGACTATAGTGATTAA 4941 43.92 MGDWIRGLPVLFLRSSSFNSMEAAASDGENHNHNNDDINKISNSREGLSKPKRQMKTPFQLETLEKAYALDTYPSESTRAELSEKLGLTDRQLQMRLKDKKEPAKKPRKVMAPALPDSPIDELRVVAEPGSDYASGSGSGSSPFGDVGLRNVVPRSVGDDMPMMRRYYEPSRSVMELRAIACVESQLGEPLREDGPILGIEFDSLPPDAFGAPIVAEQQKRSGHSYGEKYEQRDAKSNKVTARGFTEYPFMPDQSNIRADAYGPVAQPHYPDSLVEVTAARTPYLLGHEQPNRSHNYHGQVSRVRLLSQQEKQAVTIPSPAEDSTCVPPRDSFASIRMNSQFTEHPIVGQENYVLADGHVFPEDVMIRMERKRKSEEARLNKEAEAHEIKMRKELEKQDILRKKSEERMRREMEKQDRERRREEEKLLREKQREEERLKREERREHERKEKFLQREYLRAEKRRQKEAIRKEKEAVRRQAAIEKATARRIARESMELIEDEQLELMELAAANKGFSSILSLDHDTLQNLESFQDYLGAFPPKSVQLKKPFGIQPWINSEENIGNLLMVWRFFITFSDVLELWPFTLDEFVQALHDYDSRLLGEIHICLLSLIVKDIEDVARTPSAGLGINQNGVANSGGGHPQIVEGAYAWGFDICNWQKHLNPLTWPEIFRQLALSAGFGPQLKKRGLAWSEMRSNDEIVKGLFCLTVNTKKIFDRSFASATYSGFQGNAKCGEDVVSTLRNGSAAENAFAIMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSEGLTVLELAEKIQRSGLRDLSTSKTPEASISVALTRDTKLFERIAPSTYRVRAPYRKDPDDAEEILSVARKKIQVFQNGFLVGEDADDVERDEESECDDVDEDPEVDDMATTALVNEDVSKGDADLGVDNENVCHDIAGNLQNAVAKDIPSFPLSGSKDTKYLNIPTEQYAAIDETNISDLDQDNMEIDESKEGASWIQGLTEGEYHDLSVEERLNALIALTSIANEGNSIRLVLEDRLEAANAVKKQMLAEAQIDKSRLKEEIITKSDFPIHIVSKVETEHNGSAMEGGQSPFPVTEKKNDETTPSTVENLGNVSNERATLVPDLFPGSDNFLAQQCGHASKRSRSQLKSYIAHKAEEMYTYRSLPLGRDRRHNRYWQFVASSSSNDPGSGRIFVEMYDGKWRLIDSEENVSLEEEEEEEEEELGSYFVKLVNTYAHALEFSHDFDALSMALDTRGVHVPLEAFQSFWTEHRKDWGVRMKLSPSIEELLQILTLFESAVKRDFLKSDFTTTDEHLGSCSVSGTVTSDIGSVPTLPWIPRTSAAVALRLCEVDASIYYIGCEKPEPDQDKEVGEHINFSNRYVQVKNEERTKLNDLDYDDLMKNDNSANPKGFRTSYKRSRGSRDYGRRKKWQKKVNGSRSGQVRQNVKSNEKMNQGQRELGQGTQVMGIRGRRTVRKRRAEKSIPDEGLLGLMPSSSAHNIDESPKDYLGEWEDEKMDRFMDMEDEEENVMEDKENVMEDEENEENEENVNNNVEAMESEEDGQGVVGYEEGGWEFGFEGTSNSNRWNNGDLEMGSDEDADLSEDYNGTEEGGNDDIEEELDVDDTSEESDCSPNRRRIVGNNNGGAESAVSDDDYSD 1646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9728462 9741419 - CmoCh03G012850.1 Cmo03g01285 378748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01285 1646 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1151 1245 IPR028941 -
Cmo03g01285 1646 Gene3D - 49 106 - -
Cmo03g01285 1646 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT1 24 701 - -
Cmo03g01285 1646 ProSiteProfiles HARE-type HTH domain profile. 772 841 IPR007759 GO:0006355
Cmo03g01285 1646 SUPERFAMILY Homeodomain-like 42 101 IPR009057 -
Cmo03g01285 1646 SMART HOX_1 49 106 IPR001356 GO:0003677
Cmo03g01285 1646 MobiDBLite consensus disorder prediction 24 58 - -
Cmo03g01285 1646 MobiDBLite consensus disorder prediction 222 238 - -
Cmo03g01285 1646 MobiDBLite consensus disorder prediction 1516 1646 - -
Cmo03g01285 1646 MobiDBLite consensus disorder prediction 1624 1638 - -
Cmo03g01285 1646 Coils Coil 1511 1548 - -
Cmo03g01285 1646 Coils Coil 1030 1050 - -
Cmo03g01285 1646 Pfam DDT domain 560 615 IPR018501 -
Cmo03g01285 1646 SMART testlast3 559 618 IPR018501 -
Cmo03g01285 1646 MobiDBLite consensus disorder prediction 1084 1098 - -
Cmo03g01285 1646 MobiDBLite consensus disorder prediction 218 238 - -
Cmo03g01285 1646 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 980 1020 IPR028942 -
Cmo03g01285 1646 Coils Coil 1192 1212 - -
Cmo03g01285 1646 MobiDBLite consensus disorder prediction 1424 1446 - -
Cmo03g01285 1646 Coils Coil 366 397 - -
Cmo03g01285 1646 Pfam HB1, ASXL, restriction endonuclease HTH domain 772 840 IPR007759 GO:0006355
Cmo03g01285 1646 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 723 1198 IPR044977 GO:0006357
Cmo03g01285 1646 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1244 1641 IPR044977 GO:0006357
Cmo03g01285 1646 CDD homeodomain 52 102 IPR001356 GO:0003677
Cmo03g01285 1646 MobiDBLite consensus disorder prediction 400 445 - -
Cmo03g01285 1646 Coils Coil 402 479 - -
Cmo03g01285 1646 MobiDBLite consensus disorder prediction 1388 1446 - -
Cmo03g01285 1646 ProSiteProfiles 'Homeobox' domain profile. 47 107 IPR001356 GO:0003677
Cmo03g01285 1646 ProSiteProfiles DDT domain profile. 559 618 IPR018501 -
Cmo03g01285 1646 MobiDBLite consensus disorder prediction 1516 1543 - -
Cmo03g01285 1646 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 24 701 IPR044977 GO:0006357
Cmo03g01285 1646 Pfam Homeodomain 50 94 IPR001356 GO:0003677
Cmo03g01285 1646 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT1 723 1198 - -
Cmo03g01285 1646 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT1 1244 1641 - -
Cmo03g01285 1646 MobiDBLite consensus disorder prediction 1582 1616 - -
Cmo03g01285 1646 MobiDBLite consensus disorder prediction 1069 1098 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01285 Cmo07g00220 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01285 Cmo-Chr3:9728462 Cmo19g00909 Cmo-Chr19:8523938 2.89E-21 dispersed
Cmo09g01144 Cmo-Chr9:6662817 Cmo03g01285 Cmo-Chr3:9728462 1.52E-40 transposed
Cmo03g01285 Cmo-Chr3:9728462 Cmo07g00220 Cmo-Chr7:1101074 4.29E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9470 PF15613 WSD 5.60E-09 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01285 - - cmo:103484497 1902.49