Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01286 ATGGAGTCCCACGTCCTCTCACGCGCCACTTCCTTCGCCGGCGGCATTTCCAGTCTCCGCAAGTTGCATAGGGAGACCACGTCTAACAACAGCCATATCGCCTTCGTTCAAACCAGGCCGATCGCCGAGGGAGCTAACTTGATTTGGGGAAGACAACTACGGCCGTCTCTACTTCTCGACAACCTCTCGACGCCGAATCTAGCATCGGCCAAACGGGAGACGCTTCGGCCTACCTTTGCGGCGGCCTCCTCTTCTCCCGCCGGAGGCAGCGATTCCGCTGGGGAAGCGAAGGTTGCTCCAGTGGGTTTCTTTGAGAAGTATCCGGCGTTGGTCACCGGATTCTTCTTCTTCATGTGGTCCCGTGTCCTGCACGGCGGAGACCGGGTTGCAATTATTATGTCACGGCAATTTAGAGTTGGTTGTGCGAAATTACCGTGGTACTTTTTGAACGTGATTTTCAATATCCTCAACAAGAAGATATATAATTACTTCCCCTATCCATATTTTGTGTCGGTGATCCATTTGCTCGTCGGAGTGGTGTACTGTTTGATAAGCTGGGCTGTCGGTCTTCCTAAGCGAGCACCTATTGACTCAACCCTTCTGAAGTTGCTGATCCCTGTGGCTTTCTGTCATGCACTCGGCCATGTCACTAGCAATGTCTCATTTGCAGCTGTTGCTGTCTCATTCACACACACAGTCAAAGCTCTGGAACCGTTCTTTAACGCCGCCGCTTCTCAATTCATTTTGGGGCAATCCATTCCCATTACCTTGTGGCTTTCATTGGCTCCCGTTGTCATTGGTGTGTCAATGGCGTCCTTGACTGAGCTTTCATTTAACTGGACTGGCTTCATTAGTGCTATGATTTCCAATATCTCCTTTACCTACAGAAGTCTTTACTCAAAGAAAGCCATGACTGACATGGACAGCACCAACGTCTATGCCTATATTTCCATCATTGCTCTCCTTTTCTGCATTCCACCTGCTGTAATTGTGGAGGGGCCTCAGCTGCTGAAGTTTGGTTTCAACGATGCCATAGCCAAAGTTGGTGTAACCAAATTCGTGTCAGATCTCTTCTGGGTAGGGATGTTTTATCACCTTTACAATCAGTTAGCAACCAACACCCTGGAGAGGGTGGCACCACTCACCCACGCAGTCGGCAATGTGCTGAAACGTGTATTTGTGATCGGATTCTCCATCATTGTCTTTGGTAAAACACTCTTTCATTTTCTGGTTTCAATAGCTGCAAGTAATGTGGCATTAAAACATCGTGGTTGCTTGGCAGGCAACAAAATTTCAACCCAGACTGGTATTGGAACCAGCATCGCGATTGCAGGAGTGGCGCTTTACTCATACATCAAGGCTAAGATGGAAGAAGAGAAACGACTTTCTTTTGTGGACAGCGAACAAAGGTGGCTTGAAGCAGCAGCAGCAGCAGCAGCAGCAGCTTGGGGATGA 1455 48.93 MESHVLSRATSFAGGISSLRKLHRETTSNNSHIAFVQTRPIAEGANLIWGRQLRPSLLLDNLSTPNLASAKRETLRPTFAAASSSPAGGSDSAGEAKVAPVGFFEKYPALVTGFFFFMWSRVLHGGDRVAIIMSRQFRVGCAKLPWYFLNVIFNILNKKIYNYFPYPYFVSVIHLLVGVVYCLISWAVGLPKRAPIDSTLLKLLIPVAFCHALGHVTSNVSFAAVAVSFTHTVKALEPFFNAAASQFILGQSIPITLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSLYSKKAMTDMDSTNVYAYISIIALLFCIPPAVIVEGPQLLKFGFNDAIAKVGVTKFVSDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIIVFGKTLFHFLVSIAASNVALKHRGCLAGNKISTQTGIGTSIAIAGVALYSYIKAKMEEEKRLSFVDSEQRWLEAAAAAAAAAWG 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9742436 9746075 - CmoCh03G012860.1 Cmo03g01286 378749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01286 484 PANTHER SOLUTE CARRIER FAMILY 35 40 120 - -
Cmo03g01286 484 PANTHER SOLUTE CARRIER FAMILY 35 146 405 - -
Cmo03g01286 484 PANTHER SOLUTE CARRIER FAMILY 35 427 464 - -
Cmo03g01286 484 SUPERFAMILY Multidrug resistance efflux transporter EmrE 181 274 - -
Cmo03g01286 484 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 145 406 IPR004696 GO:0016021|GO:0022857|GO:0055085
Cmo03g01286 484 Pfam Triose-phosphate Transporter family 141 406 IPR004853 -
Cmo03g01286 484 PANTHER BNAC02G47130D PROTEIN 40 120 - -
Cmo03g01286 484 PANTHER BNAC02G47130D PROTEIN 146 405 - -
Cmo03g01286 484 PANTHER BNAC02G47130D PROTEIN 427 464 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01286 Cmo07g00219 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01286 Cmo-Chr3:9742436 Cmo07g00292 Cmo-Chr7:1429581 7.32E-69 dispersed
Cmo07g00219 Cmo-Chr7:1098417 Cmo03g01286 Cmo-Chr3:9742436 2.72E-138 transposed
Cmo18g01131 Cmo-Chr18:11626770 Cmo03g01286 Cmo-Chr3:9742436 0 transposed
Cmo03g01286 Cmo-Chr3:9742436 Cmo07g00218 Cmo-Chr7:1096604 5.12E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01286 K15283 - csv:101220728 725.317