Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01288 ATGCCTTTACGTCCCCTCCTGTTCCTCCTCTGTTTTCCTCTGTTTTCCTTCGCCCTCAACCAAGAGGGTCGAATTCTCCTTGACTTTAAGCGCTCCGTCGACGCTCATAACAATGCCTTCTCCTCCTGGCACGACGCCGACCCGAACCCCTGTTCCTGGTACGGCATCATCTGCGATGTAGATCATCACGTCATTTCCCTCGACCTCCCCAGCTCCGGAATTTCTGCCCCTTTTCCTGTTCATCTCTGTAACCTTCCGCTTCTCCTCTACGTTTCTCTTTACAATAATAGCTTCCATTCCCTTCTTCCGCCGGACCTCGTCAACTGTACAAATCTCGAGTATCTCGACCTGGGCCAAAATCTCTTAACCGGTTCTCTGCCTCCCTCCCTTGCTGATATGCCTAACCTCCGTTACTTGGATTTGTCCGGCAACAATTTCTCCGGCGAAATACCACCCACCTTCGCTCGGTTTCAGAAACTTGAGGCGTTTTCCCTTATTTTGAATCTGATGGGTGGTGTGATCCCTCCGTTTCTTGGGAACATAACCACTCTTAGGATGTTGAATCTGTCTTACAACAGTTTTGAGCCGGGAAGAATCCCGCCGGAGCTGGGTAATCTAGTGAATCTTGAGGTTCTTTGGTTGACGGGTTGTAACTTACAGGGGGAGATTCCTGACTCGCTGGGACGGCTCAAGAATCTCGTTCTTCTTGATTTGAGCATTAACAATCTTTCTGGGTCGTTCCCCCCAGCGCTGACGGAGTTAACCCACATGTCCCAGATTGAGTTGTTTAGCAATTCCTTGTCCGGTGCGTTACCAGATGGGCTTTCGAAACTCAAGTCGTTGCGGTTGGTCGATATTTCGATGAATAAGTTCTCTGGGCCTATTCCGAGCGACTTGTTTGAGTTGCCGCTCGAAAGCCTTAATGCGTTTGAGAATAAGTTCGAGGGTAGCTTGCCGGAAAGCATGGGGAGGTCGAGGACTTTGACAGAGGTCAAGCTATTTTCAAACAGATTCACGGGGGCGTTACCAGGATATTTGGGGAAATATTCGCCTCTGGAATCGTTGGACATTTCCAACAACTTCTTTTCCGGCAGGCTTCCCGAGGCCTTATGTGAGAATGGAAAACTGTTAGAAATAATGATGATCAACAATTTCATTTCCGGCGAACTCCCGTCGAGTCTCGGTGATTGCCACTCCCTAACCAGGATTCGATTAGGGAACAATAATCTTACGGGTCATGTACCTGAAAATTTATGGGGACTTCCAGGTGTTGTTCTGCTTGAACTTGCAAACAACAGCTTCTCTGGTCCAATCTCTAAGAACATAGCCAATTCCAAGCGGCTGAGTTTGCTTCTTATTTCTAACAACAAATTCTCAGGAACAATTCCAGAGGAGTTGGGGTCTTTGGAGAATCTGGTAGAGTTCGCCGGTGCCAATAACAAGTTCGTAGGGAATTTCCCTGAGAGCCTCACGAAAATACATACGCTTGCCAAGTTAAATCTTAAAAACAACATGCTTTCGGGGTTGATTAGCAGCAGGCTTGATGCCTGGAAGAGGCTAAATGAGCTGAATCTGGCTAATAATAACTTTTCTGGGCAAATTCCCCGTGAAATTGCTAACTTGCCTGTGCTTAATTACCTCGATCTTTCAGGCAATCAATTTTCAGGGGAAATCCCATATGGGTTACAGAACACGAACCTCAATGTTCTTAATCTATCATACAACCACTTAAATGGGACGCTTCCTTCCTATTTCGAGAGTGAAGTGTATAGAAATAGCTTTCTTGGTAATCCTGATTTGTGTAGGGATGGAAATGGAGCGTGTCGTCCAATTAAATCTAGTAGAAGAGGAGGAGATTGCGATGGGGATGGAGTTTGCATTTGGATGATGCGATCTGTTTTTGTATCAGCAGGTGTAATTTTCTTTGTGGGAATGGCTTTCTTCCACGTCAAGTACAAGAAATTCCTCGCCTCAAGAAGTCTAAACATGAAATCAAAATGGACAATGACATCCTTTCAAAAGCTGTCTTTTAGCCAGGACGAGATTGTGGGTTCCTTGGATGAACACAACGTGATAGGCAGTGGCGGCTCTGGCCAAGTTTACAAGGTTGCTCTCACCAATGGTTCCACCATTGCTGTTAAGAAACTTTGGCCCAAGGTGTCGAACGACCGCGACAGCTTCGATCTCGAGAAAGTTTGGAGTGAAGATGATGTTTTTGATGCGGAAGTGGAGATTTTGGGTAACATCAGACATAAAAACATAGTGAAACTTTTGTGTTGTTGTAGCAATGGAGTCAGCAAGCTTTTGGTGTATGAATACATGCCTAATGGAAGCTTAGGTGACATGCTTCATGACAGTAGAAGTGCGTTATTGGATTGGCCAACAAGATACAAGATAGCCTTGGATGTTGCTGAGGGGCTGTCTTATCTTCATCATGATTGTGTTCCTCCAATCATACACAGAGATATCAAGTCTAATAACATCTTGTTGGATGCTGATTTCGGAGCTATGATAGCAGATTTTGGAATAGCTATGGCTGTCGACCTATCCGAGGTTAAATCGATGTCGGTGGTTACTGGTTCTTATGGTTATATTGCTCCAGAGTATGCTTATTCATCAAAAGTGAACGAAAAGGGCGACATCTTTAGCTACGGGATGGTGATCCTTGAGCTGATAACAGGGCGGCGGCCAACCGACCCCGAGTTTGAAGAAAACGGTCTAGTGAAATGGGTATGCAGCAGTTTAGAAAAGGAAGGCATGAAGCATATTGTAGACCCGAAATTGGATTGGTGTCACATGGAGGAAATGTTGAAGGTCCTCAACATTGGGCTCCAATGCAGCAGCCCTCAACCTGTGAACCGCCCAGCCATGCGGCGAGTGGTTAAGCTGTTGGAAGAAGTTCGTATGGATAGCCACCCGATGATTGGAGGGAGAGAGGGAAGATTGAAGGCATATTGTTTGGATGATGTTTCAGAGAGTGAAAATGTGGTATAG 2994 45.82 MPLRPLLFLLCFPLFSFALNQEGRILLDFKRSVDAHNNAFSSWHDADPNPCSWYGIICDVDHHVISLDLPSSGISAPFPVHLCNLPLLLYVSLYNNSFHSLLPPDLVNCTNLEYLDLGQNLLTGSLPPSLADMPNLRYLDLSGNNFSGEIPPTFARFQKLEAFSLILNLMGGVIPPFLGNITTLRMLNLSYNSFEPGRIPPELGNLVNLEVLWLTGCNLQGEIPDSLGRLKNLVLLDLSINNLSGSFPPALTELTHMSQIELFSNSLSGALPDGLSKLKSLRLVDISMNKFSGPIPSDLFELPLESLNAFENKFEGSLPESMGRSRTLTEVKLFSNRFTGALPGYLGKYSPLESLDISNNFFSGRLPEALCENGKLLEIMMINNFISGELPSSLGDCHSLTRIRLGNNNLTGHVPENLWGLPGVVLLELANNSFSGPISKNIANSKRLSLLLISNNKFSGTIPEELGSLENLVEFAGANNKFVGNFPESLTKIHTLAKLNLKNNMLSGLISSRLDAWKRLNELNLANNNFSGQIPREIANLPVLNYLDLSGNQFSGEIPYGLQNTNLNVLNLSYNHLNGTLPSYFESEVYRNSFLGNPDLCRDGNGACRPIKSSRRGGDCDGDGVCIWMMRSVFVSAGVIFFVGMAFFHVKYKKFLASRSLNMKSKWTMTSFQKLSFSQDEIVGSLDEHNVIGSGGSGQVYKVALTNGSTIAVKKLWPKVSNDRDSFDLEKVWSEDDVFDAEVEILGNIRHKNIVKLLCCCSNGVSKLLVYEYMPNGSLGDMLHDSRSALLDWPTRYKIALDVAEGLSYLHHDCVPPIIHRDIKSNNILLDADFGAMIADFGIAMAVDLSEVKSMSVVTGSYGYIAPEYAYSSKVNEKGDIFSYGMVILELITGRRPTDPEFEENGLVKWVCSSLEKEGMKHIVDPKLDWCHMEEMLKVLNIGLQCSSPQPVNRPAMRRVVKLLEEVRMDSHPMIGGREGRLKAYCLDDVSESENVV 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9748626 9751619 + CmoCh03G012880.1 Cmo03g01288 378751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01288 997 SUPERFAMILY Protein kinase-like (PK-like) 674 965 IPR011009 -
Cmo03g01288 997 Pfam Leucine rich repeat N-terminal domain 20 59 IPR013210 -
Cmo03g01288 997 Pfam Protein kinase domain 688 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01288 997 ProSitePatterns Protein kinases ATP-binding region signature. 692 715 IPR017441 GO:0005524
Cmo03g01288 997 Gene3D Ribonuclease Inhibitor 171 264 IPR032675 -
Cmo03g01288 997 Gene3D Ribonuclease Inhibitor 18 170 IPR032675 -
Cmo03g01288 997 ProSiteProfiles Protein kinase domain profile. 686 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01288 997 SUPERFAMILY RNI-like 271 585 - -
Cmo03g01288 997 SUPERFAMILY L domain-like 42 302 - -
Cmo03g01288 997 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 9 977 - -
Cmo03g01288 997 Gene3D Transferase(Phosphotransferase) domain 1 774 976 - -
Cmo03g01288 997 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672|GO:0006468
Cmo03g01288 997 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 9 977 - -
Cmo03g01288 997 Pfam Leucine Rich repeats (2 copies) 110 148 IPR025875 -
Cmo03g01288 997 Gene3D Ribonuclease Inhibitor 265 615 IPR032675 -
Cmo03g01288 997 Pfam Leucine Rich Repeat 208 229 IPR001611 GO:0005515
Cmo03g01288 997 Pfam Leucine Rich Repeat 352 371 IPR001611 GO:0005515
Cmo03g01288 997 Pfam Leucine rich repeat 495 554 IPR001611 GO:0005515
Cmo03g01288 997 Gene3D Phosphorylase Kinase; domain 1 667 773 - -
Cmo03g01288 997 SMART serkin_6 686 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01288 997 SMART LRR_typ_2 541 564 IPR003591 -
Cmo03g01288 997 SMART LRR_typ_2 565 587 IPR003591 -
Cmo03g01288 997 SMART LRR_typ_2 133 156 IPR003591 -
Cmo03g01288 997 SMART LRR_typ_2 278 302 IPR003591 -
Cmo03g01288 997 SMART LRR_typ_2 85 109 IPR003591 -
Cmo03g01288 997 SMART LRR_typ_2 206 230 IPR003591 -
Cmo03g01288 997 SMART LRR_typ_2 397 421 IPR003591 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01288 Cmo13g00644 CCT
Cmo03g01288 Cmo18g00374 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01288 Cmo-Chr3:9748626 Cmo11g01873 Cmo-Chr11:13048466 0 dispersed
Cmo13g00644 Cmo-Chr13:6856844 Cmo03g01288 Cmo-Chr3:9748626 0 wgd
Cmo18g00374 Cmo-Chr18:2433680 Cmo03g01288 Cmo-Chr3:9748626 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74211 PF00069 Pkinase 5.20E-42 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01288 - - csv:101223091 1432.16