Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01295 ATGGGTGCTCTCATCGATCTTAATACCACCGAAGAAGATGAATCTCCCTCTTCTGCTGCTTCCTCTGTTTCTTCTTCCTCTGCTTCTGCTCTGACCTCCTCTCCTTCGCCTTCTCTTACCTCTTCTATTTGCTTGGAGCTATGGCATGCTTGTGCTGGCCCTCTCACCTCTTTGCCCAAGAAAGGGAACTTGGTTGTCTACTTGCCGCAGGGTCACTTGGAGAAGATGCAAGAATTTCCGGCTACGCCCTCTGATCTCCCTCCCCACATCCTCTGTCGCGTCATTGATGTTCAGCTTCACGCTGAGGCTGGGAGTGACGAGGTTTATGCTCAGGTTTCATTGCTTCCTGAAAACGAGCAAATGGAGCACAAGATGCAGGAAGAGATGAGCAATGACATTGAAGAGGAGGATGTTGAAGAAGGTGAGAAGACCACAACACCTCACATGTTCTGCAAGACCCTTACTGCTTCAGACACTAGTACTCATGGAGGATTCTCCGTCCCCAGGCGTGCAGCGGAGGATTGCTTCCCGCCATTGGATTATAATCAACAGAGGCCTTCACAAGAGCTTGTTGCAAAGGATCTCCTTGGGCTAAAATGGAAGTTCAGGCACATATATCGTGGGCAGCCTAGAAGGCATTTGCTAACCACTGGATGGAGTGCATTTGTGAACAAGAAAAGGCTTGTTTCTGGTGATGCAGTGCTTTTTCTTAGGGGAAACGATGGTGAATTAAGACTGGGAATACGAAGAGCTGCACAGCTTAAAAGTGGTTCTACATTTTCTAATATTTGCAGTCAGAAGCTCAACTCTAGTAGTATCATGGATGTGGTTAATGCTATATCTTCCAAAAGTTCCTTCAGCGTATGCTACAATCCTAGGGCTACCTCTTCACAGTTTGTCTTGCCTTTTCATAAGTTCTTGAAGAGCATGAACCGTTCCTTCTCTGTTGGAATGAGGTTTAGGCTGAGTTTCGAAACCGAAGATGCTGCTGATCTGAGACACACTGGACATATAACTGGAATTGGCGATGTTGATCCTATCGGATGGCCGGGATCACGGTGGAGGTCCCTTATGGTGAGGTGGGACGATGGCGAAATCAACAGGCATGGCAGGGTTTCGCCTTGGGAGATTGAGCCCTCTGGTTCTGTTTCTATGTCTAGCAACTTGGTTCCACCTGGTCTGAAAAGATCCAGGATTGGTCTCTCTTCCACAAAACTAGAGTTTCCAGTTCCACATGGGATTGGAGCAACAGACTTTGGTGAATCTTTAAGGTTCCATAAGGTCTTGCAAGGTCAAGAAATTTTAGGCTACAATACTCCCACTGACTGTGATGACAACACTCGTTATCATCCACCCGAGAAGAGGAGATTGTTGCCTGACTTACATGGTTCTGGTATAGCTCTGATGAGAAATGGTCCCAGAAACCGACTTATCAACTCCGAAACTTCCTCACGGGGTTTTGTGTTTGATGAATCCTTCCAATTCCAAAAGGTCTTGCAAGGTCAAGAAATATTTCCAGGTCCCTTTTATGGTAGGACCACGGCCACCAATGAAGTTAAGGAAAGTGGTGGTTGCGGTCCTGTCGATGGTTTTCGATTGTCTACGACTAGAGATGGATGGCCCACGCCAATGCAATGTGAAAATTTCCACACACGCTCTTCCATTCCTTCTGCTCAAGTCTCATCACCATCTTCTGTATTCATGTTTCAGCAGTCGATGGTTCCTGTTCTAAGCTTTGATTCACATAACCGTGGGAGTATGAACAACAGTACATCCCATAATTCTGGGACAGCATTTATGACCGACAATAGCATGTGTCCCACTTCATTGGGCGAGCTGAATCTGCTGGGCCTATCCCATCCTTCTACAACAACAGCTTCAGCGTTTTCAGGTAGTAAAGATCTGTCTTCAACTACCAAAGCTGGCTGCAGATTGTTTGGGTTTTCATTGACAGAGGAAAAGAATGTTGGGAATACAGACAAGGGTTCTCCACCAACAACTCCCATTCATGCAGGAACCACCATTGGAGCGCAATGTCCTTTGAAGTCTCCTCTGATGAGCAAGGTGGTTGGAAGCAACTGTACCAAAGTAAGTAACATATCTGCTCGTGCCGTAGAGGCAATATATTTTGCATAA 2136 46.4 MGALIDLNTTEEDESPSSAASSVSSSSASALTSSPSPSLTSSICLELWHACAGPLTSLPKKGNLVVYLPQGHLEKMQEFPATPSDLPPHILCRVIDVQLHAEAGSDEVYAQVSLLPENEQMEHKMQEEMSNDIEEEDVEEGEKTTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLLGLKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFLRGNDGELRLGIRRAAQLKSGSTFSNICSQKLNSSSIMDVVNAISSKSSFSVCYNPRATSSQFVLPFHKFLKSMNRSFSVGMRFRLSFETEDAADLRHTGHITGIGDVDPIGWPGSRWRSLMVRWDDGEINRHGRVSPWEIEPSGSVSMSSNLVPPGLKRSRIGLSSTKLEFPVPHGIGATDFGESLRFHKVLQGQEILGYNTPTDCDDNTRYHPPEKRRLLPDLHGSGIALMRNGPRNRLINSETSSRGFVFDESFQFQKVLQGQEIFPGPFYGRTTATNEVKESGGCGPVDGFRLSTTRDGWPTPMQCENFHTRSSIPSAQVSSPSSVFMFQQSMVPVLSFDSHNRGSMNNSTSHNSGTAFMTDNSMCPTSLGELNLLGLSHPSTTTASAFSGSKDLSSTTKAGCRLFGFSLTEEKNVGNTDKGSPPTTPIHAGTTIGAQCPLKSPLMSKVVGSNCTKVSNISARAVEAIYFA 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9773108 9777538 - CmoCh03G012950.1 Cmo03g01295 378758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01295 711 Gene3D - 313 387 - -
Cmo03g01295 711 MobiDBLite consensus disorder prediction 10 36 - -
Cmo03g01295 711 SMART B3_2 150 252 IPR003340 GO:0003677
Cmo03g01295 711 MobiDBLite consensus disorder prediction 1 36 - -
Cmo03g01295 711 Pfam Auxin response factor 277 357 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo03g01295 711 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 34 702 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo03g01295 711 Pfam B3 DNA binding domain 150 251 IPR003340 GO:0003677
Cmo03g01295 711 ProSiteProfiles B3 DNA-binding domain profile. 150 252 IPR003340 GO:0003677
Cmo03g01295 711 PANTHER AUXIN RESPONSE FACTOR 3 34 702 - -
Cmo03g01295 711 CDD B3_DNA 148 250 IPR003340 GO:0003677
Cmo03g01295 711 Gene3D - 148 252 IPR015300 -
Cmo03g01295 711 SUPERFAMILY DNA-binding pseudobarrel domain 145 258 IPR015300 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01295 Cmo07g00215 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00880 Cmo-Chr2:5451607 Cmo03g01295 Cmo-Chr3:9773108 6.63E-147 dispersed
Cmo03g01295 Cmo-Chr3:9773108 Cmo20g00509 Cmo-Chr20:2433984 9.19E-144 dispersed
Cmo03g01295 Cmo-Chr3:9773108 Cmo07g00215 Cmo-Chr7:1076631 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9472 PF02362 B3 1.60E-21 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01295 K14486 - csv:101220018 1167.14