Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01301 ATGTTCAAGTCCAGGCCCTGCAATTCTCATCACCAATGGCAACATGACATCAACTGCCTCAGATCTGCCCCTTACAACACAGTTGTTGGTGAGTATGAAGAGAAAAGTCCAGACCCAAAGCCAAGATGGAATCCAAAGCCTGAACAAATTAGGATTCTTGAAGCGATTTTCAATTCAGGGATGGTGAATCCTCCAAGAGATGAAATTAGAAAAATTCGAGGTCAGTTACAAGAATATGGCCAAGTGGGTGATGCCAATGTTTTTTATTGGTTTCAAAACAGAAAATCAAGAAGCAAAAACAAACTCCGCCATCTCCATAACTCCAAATCCAATCATAATTCCCCAACCACCACCACCACCGCCGCCGCCGCCGCCGCTCCTACAACAACAACAAAAACAACTACTCTTTCTCCCACCGCCGCCACCACTTGTTCTTCCTCTTCTTCCTCCGACAAATCCTCCCCCAAAATATCACCCATGAAAAGTTTTACCTCCAATTCGGTGTCTCAGAGCTACCTTCAACAACCCACGAACGAGCTCTTGCCTGAATCCTTCTTCTTCCCAATGCCACAAACCGGCGACGGCGGCGGTGTAATCTCTAATTTGGGTCAAGGGTTTTGCTTTTCTGAGCTTTGTAGTGTAGTGCAGCACGTTCCTGACCATGGGTTCGAATCTTGCACAAACCTGTTGCTGAGTGAGTCTGAGCCATTTAAGAAAGATTTGATGAAATCACAGCCACAGCCACAGTTCATGAATTATCATCCTTATTTGAATATCGCTACGGATCAAAGCCTTCCCCAAACAACAATTTCCACCGCAATTCCTCAAGGTGTAGGTGAAGTTTATGGAGTAGGAGGGAAATCAACGGTGTTCATCAATGGTGTAGCGTTCGAGGTTGGTTGTGGGCCGTTTAATGTTCGTGAGGCTTTTGGTGATGATGCCGTTCTGATTCACTCCACCGGTCAGCCTGTCCTGACCAATGACTGGGGCCTCACTCTCCACTCACTCCAACATGGCGCTTACTATTATCTGATATAA 1038 46.05 MFKSRPCNSHHQWQHDINCLRSAPYNTVVGEYEEKSPDPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRGQLQEYGQVGDANVFYWFQNRKSRSKNKLRHLHNSKSNHNSPTTTTTAAAAAAPTTTTKTTTLSPTAATTCSSSSSSDKSSPKISPMKSFTSNSVSQSYLQQPTNELLPESFFFPMPQTGDGGGVISNLGQGFCFSELCSVVQHVPDHGFESCTNLLLSESEPFKKDLMKSQPQPQFMNYHPYLNIATDQSLPQTTISTAIPQGVGEVYGVGGKSTVFINGVAFEVGCGPFNVREAFGDDAVLIHSTGQPVLTNDWGLTLHSLQHGAYYYLI 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9804730 9806446 - CmoCh03G013010.1 Cmo03g01301 378764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01301 345 SMART HOX_1 38 105 IPR001356 GO:0003677
Cmo03g01301 345 ProSiteProfiles 'Homeobox' domain profile. 36 101 IPR001356 GO:0003677
Cmo03g01301 345 CDD homeodomain 39 101 IPR001356 GO:0003677
Cmo03g01301 345 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 345 IPR044557 GO:0003700|GO:0050793
Cmo03g01301 345 Pfam Homeodomain 40 100 IPR001356 GO:0003677
Cmo03g01301 345 Gene3D - 40 105 - -
Cmo03g01301 345 SUPERFAMILY Homeodomain-like 36 103 IPR009057 -
Cmo03g01301 345 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 345 - -
Cmo03g01301 345 MobiDBLite consensus disorder prediction 99 162 - -
Cmo03g01301 345 MobiDBLite consensus disorder prediction 109 162 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01301 Cmo07g00209 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01301 Cmo-Chr3:9804730 Cmo14g00462 Cmo-Chr14:2226971 3.77E-15 dispersed
Cmo03g01301 Cmo-Chr3:9804730 Cmo07g00209 Cmo-Chr7:1051693 1.04E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9474 PF00046 Homeodomain 3.70E-14 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01301 - - bhj:120074379 469.544