Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01322 ATGGCTCAGTTTCATGGTAGCGCCACGGCTGGAATTAAGCTTTTTGGCACTATCATTCCTTTGCAGACCAGAAAAGTCAAGGATCAACCGGAGAAAGGCGGCGGCGGTGGTGAAGGTGATCAAACAGAGATGAAGAGGCCTGAAAAGATTATTCCTTGTCCAAGATGTAAGAGCATGGACACCAAATTCTGTTACTTTAACAATTACAATGTTAATCAGCCCAGACATTTCTGTAAGGGTTGTCAAAGGTACTGGACTGCTGGTGGGGCGCTCCGGAATGTCCCCATCGGAGCTGGACGACGGAGAGCCAAGCCGCCGCCCAATTGCCGGACGCTTTCCGGTGAGCTGCCTGATGATTATGGGCAACTTTACGATGCTGCTTCTGGGATTATTCATCAGCTTGAATTGGACGCGGTGGAGGGGTGGCATCTTGCGGTGGCGGAACAGGATTTTACCCAAGTTTTTCCTCTCAAACGCCAGAAGATTATCGGTCAATACGGTCAAACGTCTTAA 513 49.51 MAQFHGSATAGIKLFGTIIPLQTRKVKDQPEKGGGGGEGDQTEMKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPPNCRTLSGELPDDYGQLYDAASGIIHQLELDAVEGWHLAVAEQDFTQVFPLKRQKIIGQYGQTS 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9881323 9881835 - CmoCh03G013220.1 Cmo03g01322 378785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01322 170 Pfam Dof domain, zinc finger 49 104 IPR003851 GO:0003677|GO:0006355
Cmo03g01322 170 MobiDBLite consensus disorder prediction 24 46 - -
Cmo03g01322 170 ProSiteProfiles Zinc finger Dof-type profile. 51 105 IPR003851 GO:0003677|GO:0006355
Cmo03g01322 170 PANTHER CYCLIC DOF FACTOR 2 7 163 IPR045174 GO:0003700|GO:0006355
Cmo03g01322 170 MobiDBLite consensus disorder prediction 25 46 - -
Cmo03g01322 170 ProSitePatterns Zinc finger Dof-type signature. 53 89 IPR003851 GO:0003677|GO:0006355
Cmo03g01322 170 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 7 163 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01322 Cmo13g00632 CCT
Cmo03g01322 Cmo18g00391 CCT
Cmo03g01322 Cmo07g00184 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01322 Cmo-Chr3:9881323 Cmo14g00534 Cmo-Chr14:2711508 2.21E-37 dispersed
Cmo13g00632 Cmo-Chr13:6799304 Cmo03g01322 Cmo-Chr3:9881323 1.10E-53 wgd
Cmo18g00391 Cmo-Chr18:2529359 Cmo03g01322 Cmo-Chr3:9881323 6.59E-50 wgd
Cmo03g01322 Cmo-Chr3:9881323 Cmo07g00184 Cmo-Chr7:956095 2.19E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9476 PF02701 zf-Dof 1.20E-31 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01322 - - csv:101215015 315.079