Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo03g01322 | ATGGCTCAGTTTCATGGTAGCGCCACGGCTGGAATTAAGCTTTTTGGCACTATCATTCCTTTGCAGACCAGAAAAGTCAAGGATCAACCGGAGAAAGGCGGCGGCGGTGGTGAAGGTGATCAAACAGAGATGAAGAGGCCTGAAAAGATTATTCCTTGTCCAAGATGTAAGAGCATGGACACCAAATTCTGTTACTTTAACAATTACAATGTTAATCAGCCCAGACATTTCTGTAAGGGTTGTCAAAGGTACTGGACTGCTGGTGGGGCGCTCCGGAATGTCCCCATCGGAGCTGGACGACGGAGAGCCAAGCCGCCGCCCAATTGCCGGACGCTTTCCGGTGAGCTGCCTGATGATTATGGGCAACTTTACGATGCTGCTTCTGGGATTATTCATCAGCTTGAATTGGACGCGGTGGAGGGGTGGCATCTTGCGGTGGCGGAACAGGATTTTACCCAAGTTTTTCCTCTCAAACGCCAGAAGATTATCGGTCAATACGGTCAAACGTCTTAA | 513 | 49.51 | MAQFHGSATAGIKLFGTIIPLQTRKVKDQPEKGGGGGEGDQTEMKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRAKPPPNCRTLSGELPDDYGQLYDAASGIIHQLELDAVEGWHLAVAEQDFTQVFPLKRQKIIGQYGQTS | 170 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 9881323 | 9881835 | - | CmoCh03G013220.1 | Cmo03g01322 | 378785 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo03g01322 | 170 | Pfam | Dof domain, zinc finger | 49 | 104 | IPR003851 | GO:0003677|GO:0006355 | |
Cmo03g01322 | 170 | MobiDBLite | consensus disorder prediction | 24 | 46 | - | - | |
Cmo03g01322 | 170 | ProSiteProfiles | Zinc finger Dof-type profile. | 51 | 105 | IPR003851 | GO:0003677|GO:0006355 | |
Cmo03g01322 | 170 | PANTHER | CYCLIC DOF FACTOR 2 | 7 | 163 | IPR045174 | GO:0003700|GO:0006355 | |
Cmo03g01322 | 170 | MobiDBLite | consensus disorder prediction | 25 | 46 | - | - | |
Cmo03g01322 | 170 | ProSitePatterns | Zinc finger Dof-type signature. | 53 | 89 | IPR003851 | GO:0003677|GO:0006355 | |
Cmo03g01322 | 170 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.5-LIKE | 7 | 163 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g01322 | Cmo13g00632 | CCT | |
Cmo03g01322 | Cmo18g00391 | CCT | |
Cmo03g01322 | Cmo07g00184 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g01322 | Cmo-Chr3:9881323 | Cmo14g00534 | Cmo-Chr14:2711508 | 2.21E-37 | dispersed | |
Cmo13g00632 | Cmo-Chr13:6799304 | Cmo03g01322 | Cmo-Chr3:9881323 | 1.10E-53 | wgd | |
Cmo18g00391 | Cmo-Chr18:2529359 | Cmo03g01322 | Cmo-Chr3:9881323 | 6.59E-50 | wgd | |
Cmo03g01322 | Cmo-Chr3:9881323 | Cmo07g00184 | Cmo-Chr7:956095 | 2.19E-107 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9476 | PF02701 | zf-Dof | 1.20E-31 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo03g01322 | - | - | csv:101215015 | 315.079 |