Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo03g01327 | ATGGCCGATCGGTCGGACTCTGACAAGAAGTCCGAAAGCACCAGGAAGGACATGCCGGCTCTTCTTTTGGGGCGGTACGAGATCGGGAAGCTCCTTGGGCATGGGACCTTTGCAAAGGTCTATCATGCCCGAAACATCAAATCCGACGAAGGTGTCGCCATTAAAGTCATCGATAAGGAGAAGATTCTCAAGGGCGGACTAATCGCCCACATCAAACGCGAGATCTCAATCCTCCGCCGGGTTCGACATCCCAACATTGTGCAACTTTTTGAGGTTATGGCCACCAAGACCAAGATCTACTTCGTTATGGAATACGTCCGTGGCGGCGAGCTCTTCAAGAAGGTCTCCAAGGGCCGATTGAAGGAAGAGGTCGCCCGAAAGTATTTTCAGCAATTAATTTCCGCCGTTTCCTTTTGCCACGCGCGTGGTGTTTATCATCGCGACCTTAAGCCGGAGAATTTATTGCTCGATGAAAATGGAGATCTCAAGGTCTCCGATTTTGGCCTAAGCGCCGTCTCCGATCAAATTCGACAAGATGGGTTGTTCCATACTTTCTGTGGTACACCGGCGTATGTTGCTCCGGAGGTATTGGCCCGCAAAGGCTACGAGGCCGCTAAGGTCGATATTTGGTCATGTGGGGTTATTCTGTTTGTTCTGATGGCGGGTTATTTGCCCTTCCACGACCAAAACATCATGGCAATGTATAAGAAGATTTACAAGGGGGAGTTCCGGTGTCCGAGATGGTTCTCGCCGGAGCTAGTTCGACTCCTGTCTCGCCTTTTGGATACAAATCTGGAAACCCGTTTCACAATTCCAGAAATCATGGAGAATCGATGGTTCAAAAAGAGGTATAAGCATATAAAATTCTACATCGAAGATGATAAGGTGTGCAACGTGGAGGACGACACCCAAGATGTGGATTCCTTGTCGGATCAATCTCAATCGGAATCGGATTCGGAGTTCATTGAGACAAGAAGAAAGATGGGGTCACTCCCAAGACCGGCGAGTTTGAATGCATTCGATATAATATCATTTTCCCCGGGATTTGATCTTTCCGGGCTGTTCGAGGATGGAGGGGAGGAGGCAAGATTCGTGTCCAGCGCTCCAGTGTCGAAGATCATATCGAAGCTGGAAGATATCGCAAAATTGGTGAGTTTTAGCGTGAGGAAGAAGGACTGCAGGGTTAGCTTAGAGGGCACACGGGAAGGCGTGAAAGGGCCATTGACGATTGCGGCGGAGGTGTTCGAGTTGACGACGAAACTGGTGATGGTGGAGGTGAAGAGGAAAGGGGGCGACAAAACAGAGTATGAAGAGTTCTGTAACAAGGAATTGAAACCGGCATTGTTGAATCTGAAGGAGGAGCCGGGGGCAGGTGCTCCGTCACACATACCTTCAGATTCTGAATGA | 1407 | 49.47 | MADRSDSDKKSESTRKDMPALLLGRYEIGKLLGHGTFAKVYHARNIKSDEGVAIKVIDKEKILKGGLIAHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFKKVSKGRLKEEVARKYFQQLISAVSFCHARGVYHRDLKPENLLLDENGDLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYEAAKVDIWSCGVILFVLMAGYLPFHDQNIMAMYKKIYKGEFRCPRWFSPELVRLLSRLLDTNLETRFTIPEIMENRWFKKRYKHIKFYIEDDKVCNVEDDTQDVDSLSDQSQSESDSEFIETRRKMGSLPRPASLNAFDIISFSPGFDLSGLFEDGGEEARFVSSAPVSKIISKLEDIAKLVSFSVRKKDCRVSLEGTREGVKGPLTIAAEVFELTTKLVMVEVKRKGGDKTEYEEFCNKELKPALLNLKEEPGAGAPSHIPSDSE | 468 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 9900418 | 9901824 | - | CmoCh03G013270.1 | Cmo03g01327 | 378790 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo03g01327 | 468 | CDD | STKc_SnRK3 | 25 | 279 | - | - | |
Cmo03g01327 | 468 | Pfam | Protein kinase domain | 26 | 280 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo03g01327 | 468 | Pfam | NAF domain | 334 | 390 | IPR004041 | GO:0007165 | |
Cmo03g01327 | 468 | Gene3D | Transferase(Phosphotransferase) domain 1 | 17 | 332 | - | - | |
Cmo03g01327 | 468 | SUPERFAMILY | Protein kinase-like (PK-like) | 22 | 316 | IPR011009 | - | |
Cmo03g01327 | 468 | MobiDBLite | consensus disorder prediction | 304 | 324 | - | - | |
Cmo03g01327 | 468 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 144 | 156 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo03g01327 | 468 | CDD | CIPK_C | 338 | 448 | - | - | |
Cmo03g01327 | 468 | SMART | serkin_6 | 26 | 280 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo03g01327 | 468 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 18 | 451 | - | - | |
Cmo03g01327 | 468 | ProSiteProfiles | Protein kinase domain profile. | 26 | 280 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo03g01327 | 468 | Gene3D | Kinase associated domain 1, KA1 | 333 | 451 | - | - | |
Cmo03g01327 | 468 | ProSiteProfiles | NAF domain profile. | 332 | 356 | IPR018451 | GO:0007165 | |
Cmo03g01327 | 468 | ProSitePatterns | Protein kinases ATP-binding region signature. | 32 | 55 | IPR017441 | GO:0005524 | |
Cmo03g01327 | 468 | PANTHER | - | 18 | 451 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g01327 | Cmo07g00176 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g01327 | Cmo-Chr3:9900418 | Cmo03g00316 | Cmo-Chr3:4336478 | 1.89E-177 | dispersed | |
Cmo13g00625 | Cmo-Chr13:6757756 | Cmo03g01327 | Cmo-Chr3:9900418 | 0 | wgd | |
Cmo18g00399 | Cmo-Chr18:2594858 | Cmo03g01327 | Cmo-Chr3:9900418 | 0 | wgd | |
Cmo03g01327 | Cmo-Chr3:9900418 | Cmo07g00176 | Cmo-Chr7:930218 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74213 | PF00069 | Pkinase | 1.00E-73 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo03g01327 | - | - | csv:101214053 | 841.647 |