Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01327 ATGGCCGATCGGTCGGACTCTGACAAGAAGTCCGAAAGCACCAGGAAGGACATGCCGGCTCTTCTTTTGGGGCGGTACGAGATCGGGAAGCTCCTTGGGCATGGGACCTTTGCAAAGGTCTATCATGCCCGAAACATCAAATCCGACGAAGGTGTCGCCATTAAAGTCATCGATAAGGAGAAGATTCTCAAGGGCGGACTAATCGCCCACATCAAACGCGAGATCTCAATCCTCCGCCGGGTTCGACATCCCAACATTGTGCAACTTTTTGAGGTTATGGCCACCAAGACCAAGATCTACTTCGTTATGGAATACGTCCGTGGCGGCGAGCTCTTCAAGAAGGTCTCCAAGGGCCGATTGAAGGAAGAGGTCGCCCGAAAGTATTTTCAGCAATTAATTTCCGCCGTTTCCTTTTGCCACGCGCGTGGTGTTTATCATCGCGACCTTAAGCCGGAGAATTTATTGCTCGATGAAAATGGAGATCTCAAGGTCTCCGATTTTGGCCTAAGCGCCGTCTCCGATCAAATTCGACAAGATGGGTTGTTCCATACTTTCTGTGGTACACCGGCGTATGTTGCTCCGGAGGTATTGGCCCGCAAAGGCTACGAGGCCGCTAAGGTCGATATTTGGTCATGTGGGGTTATTCTGTTTGTTCTGATGGCGGGTTATTTGCCCTTCCACGACCAAAACATCATGGCAATGTATAAGAAGATTTACAAGGGGGAGTTCCGGTGTCCGAGATGGTTCTCGCCGGAGCTAGTTCGACTCCTGTCTCGCCTTTTGGATACAAATCTGGAAACCCGTTTCACAATTCCAGAAATCATGGAGAATCGATGGTTCAAAAAGAGGTATAAGCATATAAAATTCTACATCGAAGATGATAAGGTGTGCAACGTGGAGGACGACACCCAAGATGTGGATTCCTTGTCGGATCAATCTCAATCGGAATCGGATTCGGAGTTCATTGAGACAAGAAGAAAGATGGGGTCACTCCCAAGACCGGCGAGTTTGAATGCATTCGATATAATATCATTTTCCCCGGGATTTGATCTTTCCGGGCTGTTCGAGGATGGAGGGGAGGAGGCAAGATTCGTGTCCAGCGCTCCAGTGTCGAAGATCATATCGAAGCTGGAAGATATCGCAAAATTGGTGAGTTTTAGCGTGAGGAAGAAGGACTGCAGGGTTAGCTTAGAGGGCACACGGGAAGGCGTGAAAGGGCCATTGACGATTGCGGCGGAGGTGTTCGAGTTGACGACGAAACTGGTGATGGTGGAGGTGAAGAGGAAAGGGGGCGACAAAACAGAGTATGAAGAGTTCTGTAACAAGGAATTGAAACCGGCATTGTTGAATCTGAAGGAGGAGCCGGGGGCAGGTGCTCCGTCACACATACCTTCAGATTCTGAATGA 1407 49.47 MADRSDSDKKSESTRKDMPALLLGRYEIGKLLGHGTFAKVYHARNIKSDEGVAIKVIDKEKILKGGLIAHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFKKVSKGRLKEEVARKYFQQLISAVSFCHARGVYHRDLKPENLLLDENGDLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYEAAKVDIWSCGVILFVLMAGYLPFHDQNIMAMYKKIYKGEFRCPRWFSPELVRLLSRLLDTNLETRFTIPEIMENRWFKKRYKHIKFYIEDDKVCNVEDDTQDVDSLSDQSQSESDSEFIETRRKMGSLPRPASLNAFDIISFSPGFDLSGLFEDGGEEARFVSSAPVSKIISKLEDIAKLVSFSVRKKDCRVSLEGTREGVKGPLTIAAEVFELTTKLVMVEVKRKGGDKTEYEEFCNKELKPALLNLKEEPGAGAPSHIPSDSE 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9900418 9901824 - CmoCh03G013270.1 Cmo03g01327 378790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01327 468 CDD STKc_SnRK3 25 279 - -
Cmo03g01327 468 Pfam Protein kinase domain 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01327 468 Pfam NAF domain 334 390 IPR004041 GO:0007165
Cmo03g01327 468 Gene3D Transferase(Phosphotransferase) domain 1 17 332 - -
Cmo03g01327 468 SUPERFAMILY Protein kinase-like (PK-like) 22 316 IPR011009 -
Cmo03g01327 468 MobiDBLite consensus disorder prediction 304 324 - -
Cmo03g01327 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Cmo03g01327 468 CDD CIPK_C 338 448 - -
Cmo03g01327 468 SMART serkin_6 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01327 468 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 18 451 - -
Cmo03g01327 468 ProSiteProfiles Protein kinase domain profile. 26 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01327 468 Gene3D Kinase associated domain 1, KA1 333 451 - -
Cmo03g01327 468 ProSiteProfiles NAF domain profile. 332 356 IPR018451 GO:0007165
Cmo03g01327 468 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524
Cmo03g01327 468 PANTHER - 18 451 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01327 Cmo07g00176 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01327 Cmo-Chr3:9900418 Cmo03g00316 Cmo-Chr3:4336478 1.89E-177 dispersed
Cmo13g00625 Cmo-Chr13:6757756 Cmo03g01327 Cmo-Chr3:9900418 0 wgd
Cmo18g00399 Cmo-Chr18:2594858 Cmo03g01327 Cmo-Chr3:9900418 0 wgd
Cmo03g01327 Cmo-Chr3:9900418 Cmo07g00176 Cmo-Chr7:930218 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74213 PF00069 Pkinase 1.00E-73 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01327 - - csv:101214053 841.647