Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01329 ATGGAAGTTGTCAAAGTGGTTCTATTGCTGTTCATCCTCATCTGGGTCGTCTCTGCCTCAGACAGTCATTTGTCTCCGAAAGGAGTAAACTATGAAGTGGCGGCGTTGATGTCGGTGAAGAGTTGGATACGGGACGAGCGGAGAGTGATGCAAGGATGGGACATAAATTCGGTTGATCCATGCACCTGGAATATGGTTGCTTGCTCTGTTGAGGGCTTTGTGATTTCTCTTGAGATGTCAAATATGGGCTTATCTGGAACGCTTTCCCCTAGCATTGGGAACCTGAGTTATCTTCGGACAATGTTCTTGCAAAATAATGAACTATCTGGTCCAATCCCAGATGATATAGGAGAACTTTCAGAGCTTCAGACTCTTGACCTTTCTAACAACCAGTTTGTAGGCGGCATTCCAAGTTCTTTGGGGTCTCTCACTCATTTAAATTACTTGAAGCTCAGCAGTAACAAGTTAAGTGGACCAATTCCGGAATCTGTTGCAAATATTTCAGGCCTTTCCTTCTTGGATCTATCGAATAATAATCTCAGCGGCCCAACTCCAAGAATACTTGCCAAAGAGTACAGTGTTGCAGGGAATAGCTTCCTTTGTGCATCTTCATCGTCTAAAGTTTGTGGAGTAGTTTCAAAACCAGTTAATGAAACTGGTTCGCCTCAGAAAGATAATGGCCGACATCACTTGATCCTTTCCATAGCTCTAATTGTCAGTTTCACATTTGTGGTTTCTGTTGTGTTACTTGTTGGCTGGGTGCATTGTTATAGATCTCATCTTGTCTTCACGTCCTACGTGCAGCAAGATTATGAATTTGATATAGGTCATCTGAAAAGGTTTACATTCCGTGAACTACAAAAGGCAACATGTAATTTTAGTCCCCAAAACATCCTGGGACAGGGTGGTTTTGGAGTAGTTTATAAAGGTTATCTTCCAAATGGGACATATGTTGCTGTCAAGAGACTGAGAGATCCAAATTATACTGGAGAAGTGCAGTTTCAAACAGAAGTTGAAATGATTGGCTTAGCCGTGCACCGCAACCTCTTGCGTTTGTATGGCTTTTGTATGACGCCAGATGAGAGATTGCTCGTTTATCCATATATGCCAAATGGAAGCGTTGCTGACCGCCTGAGAGATGCAGGCCAGGAGAAGCCAACATTGAATTGGAACAGAAGATTGTGTATTGCCCTTGGTGCAGCTCGTGGGCTTGTATACTTGCATGAGCAGTGCAACCCAAAAATTATTCACCGGGATGTGAAAGCTGCAAATATTCTTCTAGATGAAAGCTTTGAAGCGGTGGTGGGGGATTTTGGTCTGGCAAAGATGTTAGATAGGAGAGATTCACATGTTACTACTGCTGTTAGGGGCACTGTGGGACATATTGCCCCGGAATATCTTTCAACTGGACAATCTTCAGAAAAGACTGATGTTTTTGGATTTGGCATATTGGTTCTGGAACTCTTAACAGGCCAAAAAGCACTAGATGCTGGCAATGGCCAAGTTCGAAAGGGAATGATCCTCGAATGGGTTAGAACATTACATGAGGAGAAGAGGCTAGATGTGCTGGTGGACAGGGATCTAAAAGGGTGTTATGATGCAATGGAGCTGGAAAAAGCCGTAGAGTTGGCTCTGCAGTGTACTCAGTCACATCCACAACTCAGACCGAAGATGTCCGAGATCTTGAAGGTTGTAGAAGGTCTGGTTGGACAGTCGAGTCAAATGGAGGAATCACCAGGTGGAGCAGGAAGTGTTTATGAGAATAGAGCTCACAGTTTCTCCAGAAAGTACTGTGATATTCATGAAGAGTCTTCATTTGTCATCGAAGCCATGGAGCTTTCAGGACCCCGTTGA 1854 43.8 MEVVKVVLLLFILIWVVSASDSHLSPKGVNYEVAALMSVKSWIRDERRVMQGWDINSVDPCTWNMVACSVEGFVISLEMSNMGLSGTLSPSIGNLSYLRTMFLQNNELSGPIPDDIGELSELQTLDLSNNQFVGGIPSSLGSLTHLNYLKLSSNKLSGPIPESVANISGLSFLDLSNNNLSGPTPRILAKEYSVAGNSFLCASSSSKVCGVVSKPVNETGSPQKDNGRHHLILSIALIVSFTFVVSVVLLVGWVHCYRSHLVFTSYVQQDYEFDIGHLKRFTFRELQKATCNFSPQNILGQGGFGVVYKGYLPNGTYVAVKRLRDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRDAGQEKPTLNWNRRLCIALGAARGLVYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKMLDRRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILVLELLTGQKALDAGNGQVRKGMILEWVRTLHEEKRLDVLVDRDLKGCYDAMELEKAVELALQCTQSHPQLRPKMSEILKVVEGLVGQSSQMEESPGGAGSVYENRAHSFSRKYCDIHEESSFVIEAMELSGPR 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9910217 9914405 + CmoCh03G013290.1 Cmo03g01329 378792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01329 617 SUPERFAMILY L domain-like 31 191 - -
Cmo03g01329 617 Gene3D Phosphorylase Kinase; domain 1 263 368 - -
Cmo03g01329 617 SUPERFAMILY Protein kinase-like (PK-like) 275 565 IPR011009 -
Cmo03g01329 617 Pfam Protein kinase domain 296 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01329 617 ProSiteProfiles Protein kinase domain profile. 293 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01329 617 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Cmo03g01329 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Cmo03g01329 617 SMART serkin_6 293 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01329 617 Gene3D Transferase(Phosphotransferase) domain 1 369 576 - -
Cmo03g01329 617 Pfam Leucine Rich Repeat 122 143 IPR001611 GO:0005515
Cmo03g01329 617 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 617 - -
Cmo03g01329 617 Gene3D Ribonuclease Inhibitor 29 211 IPR032675 -
Cmo03g01329 617 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 617 - -
Cmo03g01329 617 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01329 Cmo07g00173 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01329 Cmo-Chr3:9910217 Cmo05g00035 Cmo-Chr5:125060 0 dispersed
Cmo03g01329 Cmo-Chr3:9910217 Cmo07g00173 Cmo-Chr7:916091 1.10E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74215 PF00069 Pkinase 4.60E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01329 - - mcha:111012268 1117.45