Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo03g01337 | ATGATGTCCAAATCGTATACCAATCTTTTAGATTTAGCATCTGGGAATTTTCCCATCATGGGTCGTGAGAAGAAGCGACTTCCACGCGTAATGACTGTTACGGGGGTAATATCAGAGCTTGATGATGAGCAGGCAAATAGTGTGACTTCTGAGGGACCTTCGTCAGTTGTGCAAGACCGTATAATTATTGTAGCCAATCAGCTTCCTATTAAAGCTAAGCGTAGACCGGACGATATTGGCTGGAGTTTTAGTTGGGATGAAGACTCTTTGCTGTGGCAGCTCAAGGATGGTTTACCTGAAGATATGGAGGTTTTGTATGTAGGATCTTTGCGGGTGGATGTTGATTCTTCCGAACAAGATGATGTCTCCCAGCTTTTGTTGGAGAGGTTTAAGTGTGTTCCTGCGTTTTTGCCTCAGGCAATTTTATCAAAATTTTATCATGGTTTTTGTAAGCAGCAGCTGTGGCCACTATTCCATTACATGCTTCCGTACTCTGCAACTCATGGTGGTCGGTTTGATCGGTCTCTGTGGGAGGCGTATGTTGCAGCAAATAAAATTTTTTCTCAAAGGGTGATTGAGGTCATAAACCCAGATGATGATTTTGTATGGATTCATGATTACCATTTAATGGTGCTGCCTTCCTTCTTGAGGCGGAGGTTTACGAGATTGAGGATGGGTTTTTTTCTTCACAGTCCATTTCCTTCCTCAGAAATATATAGAACTTTACCAGTGAGGGAAGAGATTCTTAAGGCACTTTTGAATGCTGACCTTATTGGTTTTCACACTTTCGACTATGCTCGACATTTCTTGTCTTGTTGTAGTCGGATGTTGGGTTTGGAATATCAGTCAAAGAGGGGTTATATTGGGTTGGAATATTTTGGAAGGACTGTGGGGATAAAGATCATGCCTGTTGGAATTCACATGGGCCAGATGGAGTCAGTGTTAAGCCTTGCTGATAAAGACTGGAGGGTACAGGAGCTCAAGCGGCAGTTTGAAGGGAAAGTTGTGTTACTTGGAGTTGATGATATGGACATTTTCAAAGGGGTCAATCTGAAGTTGTTGGCAATGGAACAAATGCTAAGGCAACATCCAAAGTGGCAGGGAAGAGCCGTTTTCATACAGATTGCAAACCCAGCTAGAGGAAAGGGGAAAGATCTTGAGGAAATACGAGAGGAAATACAGGAATGCTGTAAGAGAATTAATGAAAGTTTTGGACAGGCAAATTATGAGCCTATTGTGTTCATTGATCGGCCTGTTTCTCTTGCTGAAAGAGCTGCATATTATACGGTTGCCGAATGTGTTGTAGTCACAGCGGTGAGGGATGGGATGAATCTAACACCTTATGAGTACGTTGTCTGCAGGCAGGGAACCTCTGGATCAGATTGTAGTTCAGAATCAAATGGGCCACAGAAGAGCATGCTAGTGATATCAGAGTTCATGGGATGTTCCCCTTCTCTTAGTGGTGCTATACGGGTTAACCCATGGAACATCGAAGCTACTGCTGAAGCATTGAATGAGGCAATATCAATGGCTGATGCTGAAAAACAATTGCGCCATGAAAAGCATTATAAATATGTTAGTACACATGATGTGGCGTACTGGTCAAAGAGTTTTTTCCAAGATATGGAAAGAACTTGTAAAGATCACTTCAGACGACGGTGCTGGGGAATTGGGTTGGGCTTTGGCTTTAGAGTTGTAGCACTTGATCCCAACTTTAGAAAGTTGTCTATTGATGCCATTGTAGCTGCGTATTCGAGGTCCAAAAGGAGGGCCATACTTTTGGATTATGATGGCACTGTCATGCCACAAACATCAATTGATAAGGCCCCAAGTCGTCAAGTTATTTCAATCATAGATTCACTTTGCGATGATGTTAGGAATACCGTTTTTGTTGTCAGTGGAAGAGGGCGTGAAAGTTTGGGCAACTGGTTTTCTTCTTGCGATAAACTTGGAATTGCTGCCGAGCATGGCTACTTTATGAGGTGGTCTGCCGATAAGGACTGGGAAAATTGTGGTCAAGGTAGTGATTTTGGCTGGATACAGATCGCAGAGCCAGTCATGAAATTATATACAGAAGCAACTGACGGCTCTTCTATTGAAACCAAGGAAAGTGCCTTGGTGTGGCACCACCGGGATGCAGACCCTGATTTTGGTTGCAGTCAGGCCAAGGAACTGTTGGATCACCTTGAAAGTGTGCTGGCAAATGAACCAGTCGCTGTAAAAAGTGGTCAGTTTATTGTAGAAGTGAAGCCACAGGGAGTCAGTAAAGGTTTGGTGGCAGAAAAGATCTTCACTTCAATGACGGACGCAGGCAGACGAGCTGATTTTGTGCTATGCATTGGTGATGATAGATCTGATGAAGACATGTTTGAGATCATTGGTCATGCAGTATCAAGTGGCGTCCTCTCTTCCAATACATTAGTTTTTGCCTGCACAGTCGGACAGAAACCAAGCAAGGCCAAGTATTACTTGGATGACACAACTGAGGTCATAAACATGCTTGAAGCCCTTGCAGAAGTTTCAGACATTTCTTCTCCTCCAGAATCCCCTTGA | 2553 | 43.44 | MMSKSYTNLLDLASGNFPIMGREKKRLPRVMTVTGVISELDDEQANSVTSEGPSSVVQDRIIIVANQLPIKAKRRPDDIGWSFSWDEDSLLWQLKDGLPEDMEVLYVGSLRVDVDSSEQDDVSQLLLERFKCVPAFLPQAILSKFYHGFCKQQLWPLFHYMLPYSATHGGRFDRSLWEAYVAANKIFSQRVIEVINPDDDFVWIHDYHLMVLPSFLRRRFTRLRMGFFLHSPFPSSEIYRTLPVREEILKALLNADLIGFHTFDYARHFLSCCSRMLGLEYQSKRGYIGLEYFGRTVGIKIMPVGIHMGQMESVLSLADKDWRVQELKRQFEGKVVLLGVDDMDIFKGVNLKLLAMEQMLRQHPKWQGRAVFIQIANPARGKGKDLEEIREEIQECCKRINESFGQANYEPIVFIDRPVSLAERAAYYTVAECVVVTAVRDGMNLTPYEYVVCRQGTSGSDCSSESNGPQKSMLVISEFMGCSPSLSGAIRVNPWNIEATAEALNEAISMADAEKQLRHEKHYKYVSTHDVAYWSKSFFQDMERTCKDHFRRRCWGIGLGFGFRVVALDPNFRKLSIDAIVAAYSRSKRRAILLDYDGTVMPQTSIDKAPSRQVISIIDSLCDDVRNTVFVVSGRGRESLGNWFSSCDKLGIAAEHGYFMRWSADKDWENCGQGSDFGWIQIAEPVMKLYTEATDGSSIETKESALVWHHRDADPDFGCSQAKELLDHLESVLANEPVAVKSGQFIVEVKPQGVSKGLVAEKIFTSMTDAGRRADFVLCIGDDRSDEDMFEIIGHAVSSGVLSSNTLVFACTVGQKPSKAKYYLDDTTEVINMLEALAEVSDISSPPESP | 850 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 9942083 | 9946572 | + | CmoCh03G013370.1 | Cmo03g01337 | 378800 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo03g01337 | 850 | CDD | GT20_TPS | 60 | 543 | IPR001830 | GO:0003824|GO:0005992 | |
Cmo03g01337 | 850 | CDD | HAD_TPP | 591 | 832 | - | - | |
Cmo03g01337 | 850 | TIGRFAM | T6PP: trehalose-phosphatase | 587 | 838 | IPR003337 | GO:0003824|GO:0005992 | |
Cmo03g01337 | 850 | SUPERFAMILY | HAD-like | 590 | 838 | IPR036412 | - | |
Cmo03g01337 | 850 | Gene3D | - | 718 | 845 | IPR023214 | - | |
Cmo03g01337 | 850 | Gene3D | - | 589 | 695 | IPR023214 | - | |
Cmo03g01337 | 850 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 59 | 547 | - | - | |
Cmo03g01337 | 850 | PANTHER | ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 7-RELATED | 1 | 842 | - | - | |
Cmo03g01337 | 850 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 1 | 842 | IPR001830 | GO:0003824|GO:0005992 | |
Cmo03g01337 | 850 | Gene3D | Glycogen Phosphorylase B; | 314 | 527 | - | - | |
Cmo03g01337 | 850 | Gene3D | Glycogen Phosphorylase B; | 54 | 313 | - | - | |
Cmo03g01337 | 850 | Pfam | Glycosyltransferase family 20 | 60 | 543 | IPR001830 | GO:0003824|GO:0005992 | |
Cmo03g01337 | 850 | Pfam | Trehalose-phosphatase | 593 | 827 | IPR003337 | GO:0003824|GO:0005992 | |
Cmo03g01337 | 850 | TIGRFAM | HAD-SF-IIB: HAD hydrolase, family IIB | 592 | 798 | IPR006379 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g01337 | Cmo07g00166 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g01337 | Cmo-Chr3:9942083 | Cmo19g01042 | Cmo-Chr19:9093586 | 0 | dispersed | |
Cmo11g00107 | Cmo-Chr11:557057 | Cmo03g01337 | Cmo-Chr3:9942083 | 0 | dispersed | |
Cmo11g01986 | Cmo-Chr11:13631629 | Cmo03g01337 | Cmo-Chr3:9942083 | 0 | wgd | |
Cmo03g01337 | Cmo-Chr3:9942083 | Cmo07g00166 | Cmo-Chr7:878233 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo03g01337 | K16055 | - | csv:101213082 | 1653.65 |