Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01346 ATGGCTGAGGTTTCTGGATCAACCAATGGACACCATGCTGTTTCTTTCAACATCAAAGATGAATCCACTGCCGTCACCAGCAGACAAGAAGCCGACTGGATCTCTGTTCCTTTCATTCAAAAGTTGATTGCAGAGATTGTGGGGACGTATTTCTTGATATTTGCCGGCGGGGCGTCGGTGGTTGTGAATTTGAGCAAAGACAAAGTCATCACTTTCCCAGGGATTGCAATTGTTTGGGGCTTGGCGGTAATGGTGATGGTTTATTCCGTTGGGCATATCTCTGGCGCTCATTTTAACCCTGCTGTCACCATAGCCTTTGCCACTACCAAGCGATTTCCATGGAAACAGGTGCCAGCTTATGTGATAGCTCAAGTTCTTGGATCAACATTGGCAAGTGGGACACTGAGGCTAATATTCAACGGAGAACAAGACCATTTTTCAGGGACTCTCCCAAGTGACTCGTATTTGCAGACCTTTGTGATTGAATTCATAATCACATTTTACCTCATGTTCGTGGTGTCTGGTGTTGCCACTGACAATAGAGCCATTGGTGAACTTGCTGGACTTGCTGTTGGCGCCACAGTGCTCCTCAACGTGATGTTTTCAGGGCCAATAACAGGAGCGTCCATGAATCCAGCAAGAAGCTTGGGGCCTGCTATAGTATCAAGGCAGTTCAAGGGGTTATGGATATACATGGTAGCTCCCACGTTTGGTGCAATTGCGGGTGCTCTGGTCTACAATACCATCAGGTTTACAGACAAGCCTCTACGAGAGATCACTAAAAGTGCGTCTTTCCTCAAAGGACAAGGGCGCAATGGTTCGTCTTGA 828 47.1 MAEVSGSTNGHHAVSFNIKDESTAVTSRQEADWISVPFIQKLIAEIVGTYFLIFAGGASVVVNLSKDKVITFPGIAIVWGLAVMVMVYSVGHISGAHFNPAVTIAFATTKRFPWKQVPAYVIAQVLGSTLASGTLRLIFNGEQDHFSGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMFSGPITGASMNPARSLGPAIVSRQFKGLWIYMVAPTFGAIAGALVYNTIRFTDKPLREITKSASFLKGQGRNGSS 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9977225 9978872 + CmoCh03G013460.1 Cmo03g01346 378809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01346 275 PANTHER AQUAPORIN NIP1-1-RELATED 3 268 - -
Cmo03g01346 275 CDD MIP 40 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01346 275 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Cmo03g01346 275 TIGRFAM MIP: MIP family channel proteins 44 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01346 275 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01346 275 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01346 275 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01346 275 PRINTS Major intrinsic protein family signature 161 179 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01346 275 PRINTS Major intrinsic protein family signature 192 214 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01346 275 PRINTS Major intrinsic protein family signature 229 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01346 275 PANTHER AQUAPORIN NIP2-1 3 268 IPR034294 -
Cmo03g01346 275 Pfam Major intrinsic protein 33 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo03g01346 275 Gene3D Glycerol uptake facilitator protein. 6 261 IPR023271 -
Cmo03g01346 275 SUPERFAMILY Aquaporin-like 34 260 IPR023271 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01346 Cmo07g00155 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00374 Cmo-Chr1:1828717 Cmo03g01346 Cmo-Chr3:9977225 6.47E-107 dispersed
Cmo02g00977 Cmo-Chr2:6022903 Cmo03g01346 Cmo-Chr3:9977225 1.85E-71 dispersed
Cmo03g01346 Cmo-Chr3:9977225 Cmo14g00596 Cmo-Chr14:3016805 8.83E-73 dispersed
Cmo03g01346 Cmo-Chr3:9977225 Cmo07g00155 Cmo-Chr7:845702 4.12E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01346 K09874 - csv:101219297 488.034