Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01350 ATGAAGAGTCCGGTGAGGTTTAAGTTGGGGAAACAGTCGTCCCTGGCGCCGGATGGGCATCTCGAAGATTTGGAGGAGCTGGTCAAGCAGCACCAAACTGAGGAGGGGATAGATTCGAGGGTGAGGTTGATGTATTTGGCCAATGAAGGTGATTTGGAAGGGATTAATGAACTGTTGGATTCGGGAGTCGATGTCAATTTCCATGATATCGATAACCGGACGGCTCTGCATATTGCTGCTTGCCAGGGATTCGCCGACGTCGTCGCTTTGTTGCTCGAACGTGGCGCTGAAGTTGACTCCAAAGATCGCTGGGGGAGCACGCCTCTTAGGGATGCCGTGCATTACAAGAACCACGATGTGATCAAACTTCTGGAGAAGCATGGTGCAAAGCCTCCGGTGGCTCCCATGCTCGTCAAGAATGCCCGTGAAGTGCCAGATTATGAAATTGATCCTAAGGAGCTTGATTTTACTAACAGTGTGAACATTACCAAGGGAACATTTCGCAAAGCATCTTGGCGTGGGACTGAGGTTGCTGTGAAAGAGCTTGGAGAAGATCTATTCACCGATGAGGATAAAGTGAGGGCTTTCAGAGACGAGCTTGCATTGCTTCAGAAAATACGACACCCCAATGTTGTTCAGTTTCTAGGTGCTGTTACTCAAAGTTGGCCGATGATGATAGTTACAGAATATTTGCCAAAGGGAGATCTTGCAGCATTATTGGGCAGAAAAGGAACACTAAAAACCATGACCGTTGTGAGACTTGCCCTTCATATTGCAAGGGGGATGAATTATTTGCATGAGAACAAGCCAGCACCAATTATTCATCGTGATCTTGAGCCTTCAAATATTCTGAGGGATGATTCTGGGCACCTGAAAGTAGCGGACTTTGGAGTTAGCAAGTTATTGACAGTTAAAGAAGATAAACCTTTGACCTGTTCAGAGACTTCACGGAGATATGAAGCTCCGGAGGTTTTCAAAAATGAAGAATATGACACAAAGGTGGACGTATTTTCATTTGCTTTGATTTTACAAGAGATGATTGAAGGCTGTCCTCCATTTCCCGACAAGCGAGATAGTGAAGTTCCTAAATTGTATGCAGCAGGTGAACGTCCACCATTTAAAGCACCACTTAAACGTTATGCAAACGGACTAAAAGAGCTAATTGAAGAATGCTGGAATGAGAAGCCAACTAAAAGACCTACTTTTAGGCAGATAATAACCCAGCTGGAATTCATTTACAATAGATTCGGTCATAAGAGGCGCTGGAAGGTCAGGCCATTGAAATTCTTCCAGAATATTGAGGCGATGTTGAAGAAAGATCGTTCCCGTCAAAACAGTTTGAATCTATCAACACATTCTTCTGCCAGCAGTATATGA 1377 44.73 MKSPVRFKLGKQSSLAPDGHLEDLEELVKQHQTEEGIDSRVRLMYLANEGDLEGINELLDSGVDVNFHDIDNRTALHIAACQGFADVVALLLERGAEVDSKDRWGSTPLRDAVHYKNHDVIKLLEKHGAKPPVAPMLVKNAREVPDYEIDPKELDFTNSVNITKGTFRKASWRGTEVAVKELGEDLFTDEDKVRAFRDELALLQKIRHPNVVQFLGAVTQSWPMMIVTEYLPKGDLAALLGRKGTLKTMTVVRLALHIARGMNYLHENKPAPIIHRDLEPSNILRDDSGHLKVADFGVSKLLTVKEDKPLTCSETSRRYEAPEVFKNEEYDTKVDVFSFALILQEMIEGCPPFPDKRDSEVPKLYAAGERPPFKAPLKRYANGLKELIEECWNEKPTKRPTFRQIITQLEFIYNRFGHKRRWKVRPLKFFQNIEAMLKKDRSRQNSLNLSTHSSASSI 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9989335 9995012 + CmoCh03G013500.1 Cmo03g01350 378813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01350 458 SUPERFAMILY Ankyrin repeat 19 132 IPR036770 -
Cmo03g01350 458 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 8 439 - -
Cmo03g01350 458 Pfam Protein tyrosine and serine/threonine kinase 161 409 IPR001245 GO:0004672|GO:0006468
Cmo03g01350 458 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515
Cmo03g01350 458 Gene3D - 13 144 IPR036770 -
Cmo03g01350 458 SMART ANK_2a 71 100 IPR002110 GO:0005515
Cmo03g01350 458 SMART ANK_2a 38 67 IPR002110 GO:0005515
Cmo03g01350 458 SMART ANK_2a 104 133 IPR002110 GO:0005515
Cmo03g01350 458 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 8 439 - -
Cmo03g01350 458 Gene3D Phosphorylase Kinase; domain 1 148 231 - -
Cmo03g01350 458 ProSiteProfiles Ankyrin repeat region circular profile. 71 103 - -
Cmo03g01350 458 Pfam Ankyrin repeats (3 copies) 43 131 IPR002110 GO:0005515
Cmo03g01350 458 CDD STKc_MAP3K-like 162 409 - -
Cmo03g01350 458 ProSiteProfiles Protein kinase domain profile. 121 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01350 458 PIRSF ILK 2 432 - -
Cmo03g01350 458 SUPERFAMILY Protein kinase-like (PK-like) 165 413 IPR011009 -
Cmo03g01350 458 Gene3D Transferase(Phosphotransferase) domain 1 232 456 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01350 Cmo18g00417 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00047 Cmo-Chr2:243063 Cmo03g01350 Cmo-Chr3:9989335 0 dispersed
Cmo03g01350 Cmo-Chr3:9989335 Cmo11g01513 Cmo-Chr11:10732294 3.70E-132 dispersed
Cmo19g00317 Cmo-Chr19:2394226 Cmo03g01350 Cmo-Chr3:9989335 1.24E-116 transposed
Cmo18g00417 Cmo-Chr18:2743160 Cmo03g01350 Cmo-Chr3:9989335 0 wgd
Cmo20g00274 Cmo-Chr20:1334263 Cmo03g01350 Cmo-Chr3:9989335 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74216 PF07714 PK_Tyr_Ser-Thr 6.00E-54 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01350 - - csv:101215728 832.402