Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01352 ATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGACGAAATGGGCTGCTTAAAAAAGCTTATGAACTTTCTGTTCTCTGTGATGCCGAAGTTGCTCTCATCGTTTTCTCAAGCCGCGGTCGCCTCTATGAGTATGCTAACAACAGTGTGAAGGCAACCATTGATAGATACAAGAAAGCATCCTCAGATTCCTCAAACACTGGATCTACTTCTGAAGCTAACACTCAGTTTTACCAACAAGAAGCTGCCAAACTTCGAGTTCAGATTGGTAACTTGCAGAATTCAAACAGGAACATGCTGGGTGAGTCTCTAAGTTCTTTGAGTGTAAAAGATCTGAAAAGCCTCGAGAGCAAACTTGAGAAAGGAATCAGCAGGATTAGGTCCAAAAAGAATGAACTCCTCTTTGCTGAAATTGAGTATATGCGGAAAAGGGAAATTGATTTGCACAACAACAATCAGTTGCTTCGAGCAAAGATTGCTGAGAGTGAAAGAAATGCCAACATGATGGGAGGAGAATTCGAGCTGATGCAATCTCATCCCTACGATCCCCGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCACCAGTATCCACGCCAAGACAACATGGCTCTTCAATTAGTTTAA 690 41.88 MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKASSDSSNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLSVKDLKSLESKLEKGISRIRSKKNELLFAEIEYMRKREIDLHNNNQLLRAKIAESERNANMMGGEFELMQSHPYDPRDFFQVNGLQHNHQYPRQDNMALQLV 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9999265 10002824 + CmoCh03G013520.1 Cmo03g01352 378815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01352 229 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677|GO:0046983
Cmo03g01352 229 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Cmo03g01352 229 Pfam K-box region 91 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo03g01352 229 CDD MADS_MEF2_like 10 86 IPR033896 GO:0000977|GO:0045944
Cmo03g01352 229 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 9 218 - -
Cmo03g01352 229 SUPERFAMILY SRF-like 10 84 IPR036879 GO:0003677|GO:0046983
Cmo03g01352 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Cmo03g01352 229 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Cmo03g01352 229 Gene3D - 21 103 IPR036879 GO:0003677|GO:0046983
Cmo03g01352 229 Coils Coil 132 152 - -
Cmo03g01352 229 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Cmo03g01352 229 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Cmo03g01352 229 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Cmo03g01352 229 ProSiteProfiles K-box domain profile. 95 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo03g01352 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 9 218 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01352 Cmo13g00604 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00877 Cmo-Chr1:4761861 Cmo03g01352 Cmo-Chr3:9999265 1.07E-51 dispersed
Cmo03g00892 Cmo-Chr3:6914599 Cmo03g01352 Cmo-Chr3:9999265 1.64E-32 dispersed
Cmo03g01352 Cmo-Chr3:9999265 Cmo17g01377 Cmo-Chr17:10695432 2.92E-50 dispersed
Cmo09g00760 Cmo-Chr9:3841900 Cmo03g01352 Cmo-Chr3:9999265 7.57E-36 dispersed
Cmo15g01250 Cmo-Chr15:8582334 Cmo03g01352 Cmo-Chr3:9999265 6.78E-47 dispersed
Cmo20g00972 Cmo-Chr20:5396363 Cmo03g01352 Cmo-Chr3:9999265 2.92E-19 dispersed
Cmo03g00054 Cmo-Chr3:889514 Cmo03g01352 Cmo-Chr3:9999265 9.18E-40 transposed
Cmo14g00831 Cmo-Chr14:4297767 Cmo03g01352 Cmo-Chr3:9999265 2.06E-15 transposed
Cmo13g00604 Cmo-Chr13:6645765 Cmo03g01352 Cmo-Chr3:9999265 1.41E-58 wgd
Cmo20g00279 Cmo-Chr20:1353372 Cmo03g01352 Cmo-Chr3:9999265 4.96E-101 wgd
Cmo03g01352 Cmo-Chr3:9999265 Cmo07g00148 Cmo-Chr7:816489 1.07E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9479 PF01486 K-box 2.20E-28 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01352 K09264 - csv:101221430 414.846