Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01373 ATGGAGAAAGAGCCTCTTCTTCCGTATATCAGCCCAAGGGGGAAGCCGCTTCCTCCACCTCCTCAATTATTATGTCCACTCCCTGAAAACGATGAAATTACTCTCCCTATGACACCCACGGAGTTCAAAGACCGCCTGATCTTCGGTCCTTCATCGTCTCCGCAAGACACTTCTCCCATATTCGACGCCTTGACGCTCTCCCTTTCCTCCTCAAGACCCTCTGCTTCATCTTCTCTTCAGGACCCATCTACACCTTTGGCCCCAAAATCCCAATCGCCGTCTCAACAGGCATGGCTTGTGGATTCCAATTACTCATGGCACAAAAGCAACCTCCACCGCTCCAAAACCGCACCTGCCATGGCCGTCATCAACGATGTGAACCATTCTCAAGAGCCCAAACCACAATTTGGTAAGCAATCTATTATCCGCCAAGCTGTTGTTCTTCTAATTCTTTACTTATCATTGGGCGTGCTTATCTATTGGATTAATCGTGATAAGTTTTCGGCTCACGAGACTCACCCTGTGGTCGATGCATTGTACTTTTGCATAGTAACTATGTGCACTATTGGGTATGGAGATATCACGCCCAATAGTGCTGCGACGAAGCTGTTCTCCGTATTGTTTGTGTTGGTGGGATTCGGATTTATTGATATATTACTCTCTGGAATGGTCAGTTATGTGCTTGATTTGCAGGAGAGTTATTTGTTAAGGAATGTAAAGAGAGGGGTGCAGCGTGAATCTGGGAAATCCTACATAATTGATGTGAAGAAGGGAAGAATGAGGATTAGAATGAAAGTGGCTCTGGCCTTGGGTGTTGTGATTCTTTGTATAGGACTTGGCATGGGTGTTATGCATTTTGTTGAAAATCTGGGTTGGTTGGATTCATTTTATCTTTCAGTTATGTCTGTCACAACAGTTGGATATGGTGATCAGGCGTTCAAGTCGATGACTGGTCGTATTTTTGCTTCGATTTGGTTGCTTGTATCGACCCTTGCTGTCGCTCGGGCGTTTCTTTATTTGGCAGAGGCAAGGGTAGATAAGCGGCATAGGATGATGGCAAAGTGGATACTTGGTCAGGATATGACTGTCTCTGAGTTTCTTGCTGCTGATACTGACAACAATGGCTGTGTGAGTAGGTCAGAGTATGTGTTATACAAGCTGAAGGAGATGGGAAAGGTATCAGAGAAAGATGTGATGCAGATATCTAATAACTTTGATAGACTAGACACTGGCAACTGTGGGAAGATTACACTGGCCGATCTCTTGGAAAGTCATCACTGA 1281 45.12 MEKEPLLPYISPRGKPLPPPPQLLCPLPENDEITLPMTPTEFKDRLIFGPSSSPQDTSPIFDALTLSLSSSRPSASSSLQDPSTPLAPKSQSPSQQAWLVDSNYSWHKSNLHRSKTAPAMAVINDVNHSQEPKPQFGKQSIIRQAVVLLILYLSLGVLIYWINRDKFSAHETHPVVDALYFCIVTMCTIGYGDITPNSAATKLFSVLFVLVGFGFIDILLSGMVSYVLDLQESYLLRNVKRGVQRESGKSYIIDVKKGRMRIRMKVALALGVVILCIGLGMGVMHFVENLGWLDSFYLSVMSVTTVGYGDQAFKSMTGRIFASIWLLVSTLAVARAFLYLAEARVDKRHRMMAKWILGQDMTVSEFLAADTDNNGCVSRSEYVLYKLKEMGKVSEKDVMQISNNFDRLDTGNCGKITLADLLESHH 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10089701 10093010 + CmoCh03G013730.1 Cmo03g01373 378836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01373 426 Pfam Ion channel 148 227 IPR013099 -
Cmo03g01373 426 Pfam Ion channel 272 341 IPR013099 -
Cmo03g01373 426 Gene3D - 271 334 - -
Cmo03g01373 426 Gene3D - 138 238 - -
Cmo03g01373 426 PRINTS Two pore domain K+ channel signature 184 212 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cmo03g01373 426 PRINTS Two pore domain K+ channel signature 304 313 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cmo03g01373 426 ProSitePatterns EF-hand calcium-binding domain. 370 382 IPR018247 -
Cmo03g01373 426 SUPERFAMILY Voltage-gated potassium channels 142 234 - -
Cmo03g01373 426 SUPERFAMILY EF-hand 363 423 IPR011992 -
Cmo03g01373 426 Gene3D - 335 426 - -
Cmo03g01373 426 PANTHER TWO-PORE POTASSIUM CHANNEL 3 91 421 - -
Cmo03g01373 426 MobiDBLite consensus disorder prediction 72 94 - -
Cmo03g01373 426 MobiDBLite consensus disorder prediction 11 26 - -
Cmo03g01373 426 MobiDBLite consensus disorder prediction 1 32 - -
Cmo03g01373 426 SUPERFAMILY Voltage-gated potassium channels 256 362 - -
Cmo03g01373 426 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 91 421 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01125 Cmo-Chr1:9286483 Cmo03g01373 Cmo-Chr3:10089701 1.56E-65 dispersed
Cmo03g01373 Cmo-Chr3:10089701 Cmo18g00576 Cmo-Chr18:5464120 6.52E-65 dispersed
Cmo03g01373 Cmo-Chr3:10089701 Cmo07g00133 Cmo-Chr7:715010 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01373 K05389 - csv:101220017 751.125