Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01374 ATGTCAGATGAAATGTTTAAAGATCTATTTTTGTCGAGCCCTTTTGGATACGGTGGGTTGGGTGATTCAGAAACAGGCTTGGATGAGTACGAGTCTCTAGCCAGAGCTTTTGAGCTGTCCTCGGATTACTCGAATGAAATTTCGGGGACTCCCATGAATTCCTCCGCTTCCTTCTCCTCCTCTGATGCTGGAGCTGACGAGGATGATTCCCTCAAAGACAAGGATAAGCAGATCAAAGACATGGATGACGGCGGAGAGAGCTCCAAGACCGCGGCTAAATCAAAGAAGAAAGTAGAGAAGAAAGAGAGAGAGCCCAGAGTTGCTTTCATGACCAAGAGCGAGGTCGATCATCTTGAAGATGGGTATCGATGGAGAAAATATGGACAGAAGGCTGTCAAGAACAGCGCTTATCCTAGGAGCTATTACAGATGCACGACACAGAAATGTGGAGTGAAGAAACGGGTGGAGAGATCGTATGAAGATCCATCCATAGTAATTACGACGTACGAAGGGCAACACAATCACCCAATTCCCGCGACGCTAAGGGGGAACCTGTCGGCAGCGAGCGGCGCGTTTCCGCCGTCCATGTTGGCACCAATGCCGGTGGTCGGTGGCGTGAGGTATCTTCCACAGCTGATGAACAACACTTCCGTCAACAACAACCAGGCCGTCGGAGGTGGTGAGTCCGTTTATTCACAAAGCAGCAGCTTCAATTATCCTTATAACGGACGGCAACAAGACTACGGGCTTCTGCAGGACATTTTTCCGACGGCGCCGCCGTTCTTGAACCGACAACCATGA 801 49.94 MSDEMFKDLFLSSPFGYGGLGDSETGLDEYESLARAFELSSDYSNEISGTPMNSSASFSSSDAGADEDDSLKDKDKQIKDMDDGGESSKTAAKSKKKVEKKEREPRVAFMTKSEVDHLEDGYRWRKYGQKAVKNSAYPRSYYRCTTQKCGVKKRVERSYEDPSIVITTYEGQHNHPIPATLRGNLSAASGAFPPSMLAPMPVVGGVRYLPQLMNNTSVNNNQAVGGGESVYSQSSSFNYPYNGRQQDYGLLQDIFPTAPPFLNRQP 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10098164 10099402 + CmoCh03G013740.1 Cmo03g01374 378837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01374 266 SUPERFAMILY WRKY DNA-binding domain 110 178 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo03g01374 266 MobiDBLite consensus disorder prediction 44 109 - -
Cmo03g01374 266 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 44 258 IPR044810 GO:0003700
Cmo03g01374 266 PANTHER WRKY TRANSCRIPTION FACTOR 81 44 258 - -
Cmo03g01374 266 ProSiteProfiles WRKY domain profile. 113 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo03g01374 266 Pfam WRKY DNA -binding domain 119 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo03g01374 266 Gene3D WRKY domain 102 179 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo03g01374 266 MobiDBLite consensus disorder prediction 65 109 - -
Cmo03g01374 266 MobiDBLite consensus disorder prediction 44 64 - -
Cmo03g01374 266 SMART WRKY_cls 118 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01374 Cmo-Chr3:10098164 Cmo07g00133 Cmo-Chr7:715010 4.73E-60 dispersed
Cmo20g00284 Cmo-Chr20:1380500 Cmo03g01374 Cmo-Chr3:10098164 4.97E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9480 PF03106 WRKY 1.50E-25 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01374 - - cmo:103484390 343.199