Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01381 ATGGACGTCGGTGAAGAAATCAGGGCTGCTCACAAGCGAGACTTTCTGGAATTCCTTGAACAGGATGTTGGGAAAGGAATTTACATGGACGAGATCAAAGCCATGATTAATCATAAGCGACATTGCCTCATAATCAACATTTCTGATCTTCTCTCAATTACATTCTTGTTCGATTGGAAATTTACAGTAACATGGATTCTATATAAAGTTCTGAAACTAATAAGACCAAAAGTTGTCAAAAGTGTTCATTTCTGCCCCACAACTAGGAGTTTTACCAGCCATGAATACCGTGACATTACATCCAACATGGGCTTGCCCGCTGGATCTGTGTATCCCACAAGGGATGAAAATGGCAACTTGTTGATTACCGAGTATGGCTTGTGTGGATATAAAGATCATCAAACCTTGTCAATGCAAGAAATGCCTGAGAATTCAGCGCCTGGTCAGCTTCCACGAACAGTGGATGTCATAGTTGAAGATGACTTAGTTGACTGTTGCAAGCCAGGTGATCGTGTTGCTATTGTAGGAATATATAAAGCTCTTCCAAGAAAAACCAAGGGCAGCTTGAACGGAGTGTTCAGTGATATCAACATGATGATGGTTGGTGATCCTTCTGTTGCCAAGTCTCAACTCTTAGAAACAGATACCATGGAAATCGACGATCCTCCTACTGAACCCGTACTTGATCTGTCTGCACAAGAAGCATTCAATTCTTTATTTGGTCAGCACATGCGTGCAAACCACTTGGATGTTAATGTTTTGCAGACATTGAGAATATCGTTAATGCTGCAGCAGATACTCGCTACAGCTGAAATAATGTTGCTCTTGCAGAGACTGCAAGATGATAACAGGGTAATGATAGCTGACGGCATGGTGCATATGACATCTTGA 891 41.64 MDVGEEIRAAHKRDFLEFLEQDVGKGIYMDEIKAMINHKRHCLIINISDLLSITFLFDWKFTVTWILYKVLKLIRPKVVKSVHFCPTTRSFTSHEYRDITSNMGLPAGSVYPTRDENGNLLITEYGLCGYKDHQTLSMQEMPENSAPGQLPRTVDVIVEDDLVDCCKPGDRVAIVGIYKALPRKTKGSLNGVFSDINMMMVGDPSVAKSQLLETDTMEIDDPPTEPVLDLSAQEAFNSLFGQHMRANHLDVNVLQTLRISLMLQQILATAEIMLLLQRLQDDNRVMIADGMVHMTS 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10126473 10128388 + CmoCh03G013810.1 Cmo03g01381 378844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01381 296 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 72 193 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cmo03g01381 296 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 194 214 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cmo03g01381 296 Pfam MCM OB domain 73 181 IPR033762 -
Cmo03g01381 296 PANTHER DNA REPLICATION LICENSING FACTOR MCM3 HOMOLOG 3 72 193 - -
Cmo03g01381 296 Gene3D - 73 181 IPR012340 -
Cmo03g01381 296 Gene3D - 5 66 - -
Cmo03g01381 296 Gene3D - 77 131 - -
Cmo03g01381 296 PANTHER DNA REPLICATION LICENSING FACTOR MCM3 HOMOLOG 3 194 214 - -
Cmo03g01381 296 SMART mcm 69 294 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cmo03g01381 296 SUPERFAMILY Nucleic acid-binding proteins 13 195 IPR012340 -
Cmo03g01381 296 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 149 161 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cmo03g01381 296 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 123 137 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Cmo03g01381 296 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 4 51 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cmo03g01381 296 PANTHER DNA REPLICATION LICENSING FACTOR MCM3 HOMOLOG 3 4 51 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01381 Cmo07g00117 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01381 Cmo-Chr3:10126473 Cmo19g00696 Cmo-Chr19:7351871 1.13E-10 dispersed
Cmo03g01381 Cmo-Chr3:10126473 Cmo07g00117 Cmo-Chr7:655383 9.18E-16 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01381 K02541 - dct:110093857 236.113