Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01419 ATGGCTTTCAGGTCGAGCAGTCACACCAAAACGCGGGTGGGAAGATATGAGCTGGGGAGAACCCTTGGAGAGGGCAGCTTCGCGAAGGTTAAGTTCGCTCGGAATTGCGAGACAGGGGAGAACGTCGCCATTAAAATCCTCAACAAAGAGGACATTCTCAAGCACAAGATGATCGGGCAGATTAAACGTGAAATATCAACGATGAAACTCATTAGACATCCAAATGTCATTCGAATGTATGAGGTGATGGCTAGCAAAACCAAGATATATATTGTTTTGGAATTTGTAACTGGTGGAGAACTATTCAACAAAATTGCATGTAATGGAAGATTCAAAGAAGATGAAGCAAGAAAATATTTTCAGCAGCTTATAAATGCTGTGGATTATTGCCATAGCAGGGGCGTTTGTCATCGAGACCTAAAGCCAGAGAATTTATTATTGGATGCCAGTGGCGTTCTAAAAGTTTCAGATTTTGGATTGAGTGCTCTACCTCAACAAGTTCGAGACGATGGATTACTTCACACAACATGTGGAACACCCAATTATGTTGCTCCAGAGGTTATCAACAATAAAGGCTACTGCGGTGCAAAGGCGGACCTATGGTCATGTGGGGTTATCCTTTTTGTCCTCATGGCAGGCTATTTGCCATTTGAAGAAGCCAGTCTCGTGACATTGTATAAAAAGATATTCAAGGCCGACTTCAAATGTCCTCCATGGTTCTCCTCTAGTGCCAAGAAATTAATCAAGAGAATCCTTGATCCGAATCCGTTAACTAGAATTACAATTGCTGAGGTTCTTGAGAATGATTGGTTTAAGAAAGGATACAAGCCACCCACTTTCGAAAACGACGAAATCGTTCTTGATGACGTTGACGACATCTTTAATGAATCAGGGGTAACGCAAGTCACTCATAACCTTGTAGTCGAGAAGAGAGAAGAAGGGCTCGCATCCCCTGCATCACCTGTCACCATGAATGCATTCGAGCTCATCTCGAAATCTCAGGGTCTCAACCTTGCCACTCTGTTTGAGAAGCAAATGGTAGGTTATGATCTCTCCATAGCACAAACATCTTATGTTGTGACATTGATGTTTCTCTGCAACCATCCATCTGAAGGGCTATCTAAACGTGAAAAAAGTTTCACATCCCATTGTCCAGCAGATGAAATCCTTTCCAAGATAAAAAAGACAGCAGTTCCTATGGGTTTTGATGTGAAGATCAATAATTTCAAGATGAAGCTCCAAGGGGAAAAAACTGGACGCAAAGGTCATTTATCAGTTTCAACAGAGGTCGCTCCATCGTTACATATGGTAGAGCTCCGCAAAGCTGGAGGGGATACTTTAGAATTTCACAAGGGCCTTCTTTCCCATGTTGGTTTGAAGTTTTTTCTTTTGAGTTCTGTATGGCTATCCACAGCCATTAGTTGGTTCCAAAGCTCTAACTGGATCATCTGTTACAATGTTTTCTATAATAACCTCTCAACTGGACTGAAAGATGTTGTATGGCGAACCGGAGACGAGACGGAGCAGGAAAGTAACGGTGTAGCAAATGCTTGA 1554 42.34 MAFRSSSHTKTRVGRYELGRTLGEGSFAKVKFARNCETGENVAIKILNKEDILKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFNKIACNGRFKEDEARKYFQQLINAVDYCHSRGVCHRDLKPENLLLDASGVLKVSDFGLSALPQQVRDDGLLHTTCGTPNYVAPEVINNKGYCGAKADLWSCGVILFVLMAGYLPFEEASLVTLYKKIFKADFKCPPWFSSSAKKLIKRILDPNPLTRITIAEVLENDWFKKGYKPPTFENDEIVLDDVDDIFNESGVTQVTHNLVVEKREEGLASPASPVTMNAFELISKSQGLNLATLFEKQMVGYDLSIAQTSYVVTLMFLCNHPSEGLSKREKSFTSHCPADEILSKIKKTAVPMGFDVKINNFKMKLQGEKTGRKGHLSVSTEVAPSLHMVELRKAGGDTLEFHKGLLSHVGLKFFLLSSVWLSTAISWFQSSNWIICYNVFYNNLSTGLKDVVWRTGDETEQESNGVANA 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10261849 10265672 + CmoCh03G014190.1 Cmo03g01419 378882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01419 517 Gene3D Transferase(Phosphotransferase) domain 1 96 278 - -
Cmo03g01419 517 SMART serkin_6 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01419 517 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 9 450 - -
Cmo03g01419 517 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Cmo03g01419 517 Gene3D Kinase associated domain 1, KA1 319 502 - -
Cmo03g01419 517 Gene3D Phosphorylase Kinase; domain 1 5 95 - -
Cmo03g01419 517 SUPERFAMILY Protein kinase-like (PK-like) 13 272 IPR011009 -
Cmo03g01419 517 CDD STKc_SnRK3 15 270 - -
Cmo03g01419 517 PANTHER SERINE/THREONINE KINASE 9 450 - -
Cmo03g01419 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Cmo03g01419 517 Pfam NAF domain 321 405 IPR004041 GO:0007165
Cmo03g01419 517 CDD CIPK_C 325 451 - -
Cmo03g01419 517 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01419 517 ProSiteProfiles NAF domain profile. 319 343 IPR018451 GO:0007165
Cmo03g01419 517 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01419 Cmo13g00546 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01419 Cmo-Chr3:10261849 Cmo06g01011 Cmo-Chr6:7945376 0 dispersed
Cmo06g01150 Cmo-Chr6:8812151 Cmo03g01419 Cmo-Chr3:10261849 3.12E-51 dispersed
Cmo13g00546 Cmo-Chr13:6316667 Cmo03g01419 Cmo-Chr3:10261849 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74217 PF00069 Pkinase 1.90E-74 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01419 - - csv:101214052 766.918