Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01425 ATGAGGCTTTCAAGTGCTGGTTTTAGTCCTCAGCCTCCGGAAGGGGAGAGGAGAGTTCTTAACTCGGAGCTTTGGCATGCCTGTGCGGGCCCCCTTGTTTCTCTCCCTGCTGTTGGAAGCCGGGTTGTCTATTTTCCACAGGGTCATAGCGAGCAGGTTGCCATATCAACCAACAGAGAAGTAGATGCCCATATACCCAGTTATCCAAGCTTGCCGCCACAACTTATCTGTCAGCTTCACAATGTCACAATGCACGCAGATGTCGAGACGGATGAAGTGTATGCCCAAATGACCTTGCAACCACTCAGTGCTCAAGAACAAAAGGAGCCTTGTCTTCCAGCTGAGTTGGGCGCCCCCAGCAAACAACCAACCAATTATTTTTGCAAAACATTGACAGCAAGTGACACGAGTACACATGGAGGATTTTCTGTTCCTCGTCGAGCTGCCGAGAAAGTGTTCCCGCCATTGGACTTTTCTCAGCAGCCACCTGCTCAGGAGTTGATCGCCAGGGATCTACACGAGAATGAATGGAAATTTAGGCATATTTTTCGGGGCCAGCCCAAAAGGCATCTTCTTACGACTGGATGGAGTGTGTTCGTAAGTGCTAAGAGGCTCGTTGCTGGCGATTCGGTTATCTTCATTTGGAATGAGAAGAATCAGTTACTATTGGGGATCCGTCGAGCTAATCGACCACAAACGGTGATGCCCTCGTCGGTTTTATCTAGTGACAGCATGCACTTGGGGCTTCTTGCTGCGGCAGCCCATGCAGCTGCTACAAATAGTCGGTTCACGATATTTTATAATCCAAGAGCTTGCCCATCAGAGTTCATCATACCTCTGGCTAAGTATGTCAAAGCTGTGTACCATACCCGTGTCTCCGTTGGTATGCGATTTAGAATGCTATTTGAAACAGAAGAATCAAGCGTTCGTCGTTACATGGGCACTATTACTGGCATCAGCGATTTAGATTCGACCCGGTGGCCGAATTCACACTGGCGGTCAGTCAAGGTTGGATGGGATGAATCTACGGCTGGGGAGAGACAGCCAAGGGTGTCGTTATGGGAGATCGAACCACTTACGACCTTCCCACTGTATCCTTCTCCATTTTCCCTCAGGCTTAAGCGACCGTGGCCAACTGGATTTCCTTCCTTCCATGGTCTAAAAGAGGATGATCTGGGATTGAATTCTCAACTAATGTGGCTAAGGGGGGATGGTCTAGATCGTGGGATTCAAGCTATGAACTTCCCTGGCATTGGAGTTGCACCATGGATGCAGCCGAGGCTTGATGCTTCTATGGTGGGTATGCAGCCAGAGATATATCAAGCAATGGCTGCTGCTGCACTACAGGAGATGAGAACTGTAGATCCTGCTAAGGTCCAGGCAGCTTCGCTTCTTCAATTTCAACAAACCCAAACTCTTCCGAACAGGCCTACTACTTTCATGCCGCCTCAGATATTGCAGCAGCCTCAACCGACGTTTATTCAGGGCGACGATAACCAACGTCTCTCTCATTCTCAGGCTCAAACCCTGCCTACTGTTCTTCAGCAGGAGATAAAGCATCAAACATTCAACAATCAGCAGCAGCAGCAGCAACAGCAAGTGTTTGATCACCAACAAATCCCAAGTACCATCACTACAATGTCTCAGTTCAGTTCTGCATCCCAATCCCAAGCTCAATCCCTGCAAACGACTCCTCCGTTATGTCGTCAGCAGAGTTTTTCTGATTCAAATCCCAACCATGTGACGAGTCCTATCATTTCACCCTTGCACAGCCTGTTAGGGTCGTTTCCGCAAGACGAATCATCTCAGTTGCTCAATCTTCCTCGAACCAATCCCATGGTACATTCATCTACATGGCCATCAAAGCGAGCTGCAGTCGATCCTCTCCTCTCTTCTGTAAATTCTCAGTTTGTTCTTCCTCAAGGGGAAAATATGGGGACAACTCAGACGAACATCTCTCAGAATGCTATTTCGTTGCCGCCTTTTCCTGGTCGAGAGTGTTCGTTAGATCAAGGGAACACCGATCCGCAGAGTAATCTTCTTTTTGGTGTCAATATAGAGTCTTCAAGTCTTCTAATGCAGAGTGGCATGCCAAATCTTAGGGGAATTTGCAGTGACAGTGACTCAACAGCTATACCTTTTTCATCCAACTATGTGAATACTGCTGCTTCCAACTTCTCTGCCAATCCGACCGGGACGCCTTCCAATTGCATTGAGGATTCGGGTTTCTTGCAGTCTCCAGAGAACACAGGCCAAGTAAACCCATCAACCAGAACCTTTGTAAAGGTTTACAAGTCAGGGTCCTTGGGTAGATCACTGGATATTTCCAAATTCAGTAGCTACCATCAATTACGCAGTGAGCTCGCGCACATGTTCGGCCTTGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTCGACCGGGAAAATGACGTTCTTCTTCTCGGGGACGATCCCTGGCCCGAGTTCGTCAATAGCGTGTGGTGTATCAAAATACTTTCACCACAGGAAGTGCAGGAGATGGGCAAACAAGGCCTAGAGCTGTTGAAATCGGTCCCAATTCAGAGGCTCTCAAATGGCAGCTGTGATAACTATGCCAACAGACAGGAGTCGTCCAGAAACTTAAGTACCGGGATAACTTCTGTCGGGTCGCTCGAGTACTAA 2679 48.41 MRLSSAGFSPQPPEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAISTNREVDAHIPSYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSAQEQKEPCLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRACPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSTRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPLYPSPFSLRLKRPWPTGFPSFHGLKEDDLGLNSQLMWLRGDGLDRGIQAMNFPGIGVAPWMQPRLDASMVGMQPEIYQAMAAAALQEMRTVDPAKVQAASLLQFQQTQTLPNRPTTFMPPQILQQPQPTFIQGDDNQRLSHSQAQTLPTVLQQEIKHQTFNNQQQQQQQQVFDHQQIPSTITTMSQFSSASQSQAQSLQTTPPLCRQQSFSDSNPNHVTSPIISPLHSLLGSFPQDESSQLLNLPRTNPMVHSSTWPSKRAAVDPLLSSVNSQFVLPQGENMGTTQTNISQNAISLPPFPGRECSLDQGNTDPQSNLLFGVNIESSSLLMQSGMPNLRGICSDSDSTAIPFSSNYVNTAASNFSANPTGTPSNCIEDSGFLQSPENTGQVNPSTRTFVKVYKSGSLGRSLDISKFSSYHQLRSELAHMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKQGLELLKSVPIQRLSNGSCDNYANRQESSRNLSTGITSVGSLEY 892
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10309688 10315360 - CmoCh03G014250.1 Cmo03g01425 378888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01425 892 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Cmo03g01425 892 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo03g01425 892 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 870 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo03g01425 892 Gene3D - 125 228 IPR015300 -
Cmo03g01425 892 Gene3D - 754 847 - -
Cmo03g01425 892 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Cmo03g01425 892 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Cmo03g01425 892 Gene3D - 291 363 - -
Cmo03g01425 892 PANTHER AUXIN RESPONSE FACTOR 6 1 870 - -
Cmo03g01425 892 ProSiteProfiles PB1 domain profile. 758 842 IPR000270 GO:0005515
Cmo03g01425 892 SUPERFAMILY CAD & PB1 domains 749 833 - -
Cmo03g01425 892 SMART B3_2 127 229 IPR003340 GO:0003677
Cmo03g01425 892 MobiDBLite consensus disorder prediction 547 580 - -
Cmo03g01425 892 CDD B3_DNA 126 227 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01425 Cmo13g00540 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01425 Cmo-Chr3:10309688 Cmo15g00807 Cmo-Chr15:3977365 0 dispersed
Cmo15g01361 Cmo-Chr15:9303666 Cmo03g01425 Cmo-Chr3:10309688 1.97E-15 dispersed
Cmo16g00585 Cmo-Chr16:2822610 Cmo03g01425 Cmo-Chr3:10309688 6.09E-14 dispersed
Cmo13g00540 Cmo-Chr13:6272616 Cmo03g01425 Cmo-Chr3:10309688 0 wgd
Cmo18g00468 Cmo-Chr18:3127927 Cmo03g01425 Cmo-Chr3:10309688 0 wgd
Cmo03g01425 Cmo-Chr3:10309688 Cmo07g00080 Cmo-Chr7:500794 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9484 PF02362 B3 1.00E-21 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01425 - - csv:101210406 1632.85