Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01442 ATGGCGCTTCTCATGCATAAAGACATGGGTTCCAGCAAATACGTACGGTATACACCCGAGCAAGTTGAGGCATTAGAGAGAGTTTATGCAGAATGTCCTAAGCCCAGTTCTCTCAAAAGGCAGCAGCTCATTAGAGAGTGCCCGATCCTTTCTAACATTGAGCCTAAACAGATCAAAGTTTGGTTTCAAAATCGCAGATGCCGTGAGAAGCAAAGGAAGGAATCTTCTCGGCTCCAGAGCGTTAATAGAAAGTTGTCAGCGATGAACAAATTGTTGATGGAGGAGAATGACCGCTTACAGAAGCAGGTGTCTCATTTGGTGTATGAGAATGGCTATGTCCGCCAGAAACTTAGTGCATCTGGGACGACTACAGACAATAGCTGTGAGTCTGTAGTCATGAGCGGTCAGCCTCAACAACAGCAAAACCCAAATCCTCAGCATCCCAATAGGGATGTCAACAACCCAGCTGGTCTTCTAGCGATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCCATCGGTATCGTTGCTGTTTCCCGCAACTGCAGCGGGGTGGCAGCACGAGCCTGTGGTCTTGTTAGTCTAGAGCCAACAAAGGTTGCAGAAATTCTCAAAGATCGTCTTTCCTGGTATCGTGACTGCCGATGTCTTAACGTTGTAAGTGTTATTCCTACGGGAAATGGGGGAACAATAGAGCTCATATATATGCAGACTTACGCTCCAACTACATTAGCAGCAGCACGTGACTTCTGGACTATGAGATATACAACAAGTTTAGAAGATGGCAGTGTAGTGGTTTGTGAGAGGTCATTGACTTCTTCTACTGGTGGCCCAGCAGGGCCTCCGCCATCTACTTTTGTTAGAGCTGAGATGCTTCCTAGTGGCTACTTAATACGAGCGTGCGAGGGTGATGGATCGATTATTCACATTGTCGATCACATTGATTTGGATGTTTGGAGTGTCCCTGAAGTTCTTAGGCCACTTTACGAGTCATCCAAGATCCTTGCTCAGAAAATGACAACTGCTGCATTGCGTCACGTTAGACAAATTGCTCAAGAGACTAATGGAGAGATTCAATACACTGGTGGACGCCAACCCGCTGTACTGCGGACGTTCAGTCAAAAACTTTGCAGGGGTTTCAACGACGCTGTTAATGGGTTTGCTGATGATGGTTGGTCGCCTATGGGCAGTGATGGTTTGGAGGATGTGACAATTGTCATAAATTCATCAGCAAACGTGTTTCCCGGATCCCAGTATAACACATCGATGTATCCCTCTTTTGGTGGAGGAGTGATGTGTGCAAAAGCGTCGATGTTACTTCAGGACGTTCCCCCTGCTTTGCTTGTTCGATTCCTGAGAGAGCATCGGTCTGAATGGGCTGATTATGGAGTTGATGCCTACTGTGCCGCAAGTTTAAAAGCCAGTCCATATGCTGTTCCATGTGCAAGGCCTGGTGGCTTCCCTAGCAGCCAGGTTATATTGCCTCTTGCTTCTACTGTGGAGCGTGAGGAGTTTTTGGAGGTGGTTCGGCTGGAGGGCCTTGCATTCTCTCCCGATGACGTTGCTTTGGCTGGCCGAGATATGTACTTATTGCAGCTCTGTAGTGGGGTTGATGAAAATGCAGTTGGAGCTTGTGCTCAGCTTGTGTTTGCTCCTATAGATGAATCCTTTGCGGATGATGCTCCATTACTTCCTTCAGGATTTCGTGTCATCCCACTGGATCCGAAAACAGATGATCCTACTGCTGCTCGAACATTGGATTTGGCCTCTACTCTTGAAGTTGGTGCCAATGCTGCACGTTCTGCTGGTCAAACTGATTTGAGCAGCTACAATCTTCGTTCAGTCTTGACAATCGCTTTCCAGTTCACTTTTGAGAATCACTTACAGGAAAATGTGGCTGCAATGGCCCGACAATATGTCCGTAGTGTTGTCGGGTCCGTTCAAAGGGTTGCCATGGCCATTGCCCCATCTCGGTTGAGTTCCAATATGGGACTAAAGCCCCTTCCTGGTTCTCCTGAAGCTCTCACTTTGGCTCGATGGATTTGCCGAAGTTACAGGATCCATGTTGGATCTGAGCTCCTTCAAGCTGATTCTCAGCCTGGGGGGGATGCCATGTTGAAGCTGCTATGGCACCACTCCGATGCAATCATGTGTTGCTCTGTAAAAACCAACGCATCTGCTGTGTTCACCTTCGCTAACCAGGCTGGTTTGGACATGCTTGAAACCACTCTTGTTGGCCTGCAAGATATAATGCTCGACAAAATTCTCGATGAGGCAGGTCGGAAGATTCTCTGCACTGAGTTCCCCAAAATAATGCAGCAGGGATTCACAAATCTTCCATCTGGTATTTGCATATCGAGTATGGGCCGTCCCATTTCTTACGAGCAAGCCATTGCCTGGAAGGTTCTAAATGATGATGATTCCAATCACTGTCTAGCTTTCATGTTCATAAACTGGTCCTTTGTGTGA 2529 47.69 MALLMHKDMGSSKYVRYTPEQVEALERVYAECPKPSSLKRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQSVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYVRQKLSASGTTTDNSCESVVMSGQPQQQQNPNPQHPNRDVNNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRLSWYRDCRCLNVVSVIPTGNGGTIELIYMQTYAPTTLAAARDFWTMRYTTSLEDGSVVVCERSLTSSTGGPAGPPPSTFVRAEMLPSGYLIRACEGDGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKMTTAALRHVRQIAQETNGEIQYTGGRQPAVLRTFSQKLCRGFNDAVNGFADDGWSPMGSDGLEDVTIVINSSANVFPGSQYNTSMYPSFGGGVMCAKASMLLQDVPPALLVRFLREHRSEWADYGVDAYCAASLKASPYAVPCARPGGFPSSQVILPLASTVEREEFLEVVRLEGLAFSPDDVALAGRDMYLLQLCSGVDENAVGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTDDPTAARTLDLASTLEVGANAARSAGQTDLSSYNLRSVLTIAFQFTFENHLQENVAAMARQYVRSVVGSVQRVAMAIAPSRLSSNMGLKPLPGSPEALTLARWICRSYRIHVGSELLQADSQPGGDAMLKLLWHHSDAIMCCSVKTNASAVFTFANQAGLDMLETTLVGLQDIMLDKILDEAGRKILCTEFPKIMQQGFTNLPSGICISSMGRPISYEQAIAWKVLNDDDSNHCLAFMFINWSFV 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10443739 10449183 - CmoCh03G014420.1 Cmo03g01442 378905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01442 842 Gene3D - 194 378 IPR023393 -
Cmo03g01442 842 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 9 842 IPR044830 GO:0003700
Cmo03g01442 842 SMART HOX_1 10 76 IPR001356 GO:0003677
Cmo03g01442 842 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HOX32 9 842 - -
Cmo03g01442 842 SUPERFAMILY Homeodomain-like 13 74 IPR009057 -
Cmo03g01442 842 Pfam Homeodomain 13 71 IPR001356 GO:0003677
Cmo03g01442 842 ProSiteProfiles 'Homeobox' domain profile. 8 72 IPR001356 GO:0003677
Cmo03g01442 842 Pfam START domain 161 369 IPR002913 GO:0008289
Cmo03g01442 842 Pfam MEKHLA domain 696 841 IPR013978 -
Cmo03g01442 842 Coils Coil 78 102 - -
Cmo03g01442 842 Gene3D - 6 80 - -
Cmo03g01442 842 CDD START_ArGLABRA2_like 155 371 - -
Cmo03g01442 842 CDD bZIP 65 104 - -
Cmo03g01442 842 MobiDBLite consensus disorder prediction 118 151 - -
Cmo03g01442 842 MobiDBLite consensus disorder prediction 118 154 - -
Cmo03g01442 842 CDD homeodomain 13 73 IPR001356 GO:0003677
Cmo03g01442 842 ProSiteProfiles START domain profile. 151 379 IPR002913 GO:0008289
Cmo03g01442 842 SMART START_1 160 370 IPR002913 GO:0008289
Cmo03g01442 842 SUPERFAMILY Bet v1-like 161 372 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01442 Cmo13g00523 CCT
Cmo03g01442 Cmo07g00065 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01442 Cmo-Chr3:10443739 Cmo08g00692 Cmo-Chr8:4405129 0 dispersed
Cmo13g00523 Cmo-Chr13:6138496 Cmo03g01442 Cmo-Chr3:10443739 0 wgd
Cmo03g01442 Cmo-Chr3:10443739 Cmo07g00065 Cmo-Chr7:369276 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9485 PF01852 START 4.10E-49 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01442 K09338 - csv:101210154 1574.68