Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01443 ATGGGCTCGTTATATAATGGTGAGGCTGATGATCAGCAAAAGTACTCTGATTCTCACAATCATTCTTCATCAGTCATAAATGGACTAAATCAACCCATCATCACAACCCCAAATCAGTATGTAGCACCTCCTCAAGTTGGAGCGGGACATTCTATGTTACAAGTAGGTAGAACAAAGAAAGGAACAGATCCTTATTACAGAAGCATCTTCACTCCCTATGACTCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTTCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAGCAGTATCATGGCATTTTACGACGTCGACAATCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTAAAGTCTAGGAAGCCCTACTTGCATGAATCTCGACATTTGCATGCATTGAGGAGAGCTAGAGGTTGTGGTGGTCGGTTTCTCAAATCAAATAAGAATGAGAACCAACAAAAAGAAGTGGCATCAGGTGATAAGTCACAGCCAAATATAAATCTGAATTCTGATAAAAGTGATCTTGCTTCTTCAGAGAACTGA 609 41.54 MGSLYNGEADDQQKYSDSHNHSSSVINGLNQPIITTPNQYVAPPQVGAGHSMLQVGRTKKGTDPYYRSIFTPYDSQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENQQKEVASGDKSQPNINLNSDKSDLASSEN 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10452672 10456216 - CmoCh03G014430.1 Cmo03g01443 378906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01443 202 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 7 187 IPR001289 GO:0003700|GO:0006355
Cmo03g01443 202 MobiDBLite consensus disorder prediction 167 202 - -
Cmo03g01443 202 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 110 165 IPR001289 GO:0003700|GO:0006355
Cmo03g01443 202 SMART cbf3 107 168 IPR001289 GO:0003700|GO:0006355
Cmo03g01443 202 MobiDBLite consensus disorder prediction 159 202 - -
Cmo03g01443 202 PRINTS CCAAT-binding transcription factor subunit B signature 111 133 IPR001289 GO:0003700|GO:0006355
Cmo03g01443 202 PRINTS CCAAT-binding transcription factor subunit B signature 142 165 IPR001289 GO:0003700|GO:0006355
Cmo03g01443 202 MobiDBLite consensus disorder prediction 1 24 - -
Cmo03g01443 202 MobiDBLite consensus disorder prediction 125 145 - -
Cmo03g01443 202 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 7 187 - -
Cmo03g01443 202 ProSitePatterns NF-YA/HAP2 subunit signature. 113 133 IPR018362 GO:0003677|GO:0016602
Cmo03g01443 202 Gene3D - 108 169 - -
Cmo03g01443 202 ProSiteProfiles NF-YA/HAP2 family profile. 108 168 IPR001289 GO:0003700|GO:0006355
Cmo03g01443 202 MobiDBLite consensus disorder prediction 126 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01443 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - csv:101205549 330.872
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01293 Cmo-Chr2:7695004 Cmo03g01443 Cmo-Chr3:10452672 5.34E-36 dispersed
Cmo03g01443 Cmo-Chr3:10452672 Cmo20g00092 Cmo-Chr20:465885 5.13E-36 dispersed
Cmo03g01443 Cmo-Chr3:10452672 Cmo07g00064 Cmo-Chr7:362941 1.25E-102 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo20g00092 CCT,CST,ECH 1 272 CCAAT-HAP2 Transcription Factor Family AT5G12840 50.7 9.4e-56 214.5
Cmo02g01293 CCT,CST,ECH 18 269 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.9 3.6e-55 212.6
Cmo02g01293 CCT,CST,ECH 105 340 CCAAT-HAP2 Transcription Factor Family AT3G20910 52.7 2.3e-50 196.8
Cmo11g00859 CCT,CST,ECH 1 239 CCAAT-HAP2 Transcription Factor Family AT3G20910 51.6 5.7e-46 182.2
Cmo10g00972 CCT,CST,ECH 19 255 CCAAT-HAP2 Transcription Factor Family AT3G20910 51.7 5.7e-46 182.2
Cmo07g00064 . 62 173 CCAAT-HAP2 Transcription Factor Family AT2G34720 71.4 1.8e-38 156.4
Cmo07g00064 . 1 175 CCAAT-HAP2 Transcription Factor Family AT1G30500 61.1 1.4e-50 196.8
Cmo03g01443 . 63 200 CCAAT-HAP2 Transcription Factor Family AT1G30500 62.3 9.5e-39 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9486 PF02045 CBFB_NFYA 4.00E-26 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo03g01443 Cmo_Chr03 FPKM 13.932559 15.338873 14.904554 16.206354 18.739588 20.789417 18.116585 15.92668 15.636951 14.846445