Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01443 ATGGGCTCGTTATATAATGGTGAGGCTGATGATCAGCAAAAGTACTCTGATTCTCACAATCATTCTTCATCAGTCATAAATGGACTAAATCAACCCATCATCACAACCCCAAATCAGTATGTAGCACCTCCTCAAGTTGGAGCGGGACATTCTATGTTACAAGTAGGTAGAACAAAGAAAGGAACAGATCCTTATTACAGAAGCATCTTCACTCCCTATGACTCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTTCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAGCAGTATCATGGCATTTTACGACGTCGACAATCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTAAAGTCTAGGAAGCCCTACTTGCATGAATCTCGACATTTGCATGCATTGAGGAGAGCTAGAGGTTGTGGTGGTCGGTTTCTCAAATCAAATAAGAATGAGAACCAACAAAAAGAAGTGGCATCAGGTGATAAGTCACAGCCAAATATAAATCTGAATTCTGATAAAAGTGATCTTGCTTCTTCAGAGAACTGA 609 41.54 MGSLYNGEADDQQKYSDSHNHSSSVINGLNQPIITTPNQYVAPPQVGAGHSMLQVGRTKKGTDPYYRSIFTPYDSQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENQQKEVASGDKSQPNINLNSDKSDLASSEN 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10452672 10456216 - CmoCh03G014430.1 Cmo03g01443 378906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01443 202 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 7 187 IPR001289 GO:0003700|GO:0006355
Cmo03g01443 202 MobiDBLite consensus disorder prediction 167 202 - -
Cmo03g01443 202 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 110 165 IPR001289 GO:0003700|GO:0006355
Cmo03g01443 202 SMART cbf3 107 168 IPR001289 GO:0003700|GO:0006355
Cmo03g01443 202 MobiDBLite consensus disorder prediction 159 202 - -
Cmo03g01443 202 PRINTS CCAAT-binding transcription factor subunit B signature 111 133 IPR001289 GO:0003700|GO:0006355
Cmo03g01443 202 PRINTS CCAAT-binding transcription factor subunit B signature 142 165 IPR001289 GO:0003700|GO:0006355
Cmo03g01443 202 MobiDBLite consensus disorder prediction 1 24 - -
Cmo03g01443 202 MobiDBLite consensus disorder prediction 125 145 - -
Cmo03g01443 202 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 7 187 - -
Cmo03g01443 202 ProSitePatterns NF-YA/HAP2 subunit signature. 113 133 IPR018362 GO:0003677|GO:0016602
Cmo03g01443 202 Gene3D - 108 169 - -
Cmo03g01443 202 ProSiteProfiles NF-YA/HAP2 family profile. 108 168 IPR001289 GO:0003700|GO:0006355
Cmo03g01443 202 MobiDBLite consensus disorder prediction 126 145 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01293 Cmo-Chr2:7695004 Cmo03g01443 Cmo-Chr3:10452672 5.34E-36 dispersed
Cmo03g01443 Cmo-Chr3:10452672 Cmo20g00092 Cmo-Chr20:465885 5.13E-36 dispersed
Cmo03g01443 Cmo-Chr3:10452672 Cmo07g00064 Cmo-Chr7:362941 1.25E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9486 PF02045 CBFB_NFYA 4.00E-26 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01443 K08064 - csv:101205549 330.872