Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01445 ATGGAACTTGGGAGGCCTGGCTCAGGCAAAAGAAGGCTAAGGGACCTATTGCTCCTAAAGGATAATCGCTTCTGTGCGGATTGTCGCGCTTCAGACCCTAAATGGGCGTCAGCAAATATTGGAGTCTTTATATGCTTGAAATGTTGCGGCGTTCACAGAAGCCTTGGTGCACATATATCAAAGGTGTTATCAGTGACATTGGATGAATGGAATGATGATGAAATTGATGCCATGATAGAAATTGGAGGAAATTCTTCTGCAAATGCAATTTATGAAGCCTTTATTCCTGATGGATTTTCAAAACCTGGACCAGATGCCAGCCATGAACAACGTTCAAGATTTATTCGATCCAAATATGAACTTCAAGAATTTCTGAAACCGAGCTTGAGAATTTCATCAGCCCACTCTGACAAAAGCAATATCCAAGCAAACTTTGCAACAAGGGTCATGAACAGTTTTCGTTCGTCACAAAAACAAGAAGGTATGGTAGACTTTATTGGATTATTGAAGGTCAAAGTGATTAAAGGGACAAACTTAGCTATCAGGGATATGATGACAAGCGATCCTTATGTAGTCTTGACTCTTGGACGACAGACTGTCCAGACATGTGTAGTCGCGAGCAACTTGAACCCTGTGTGGAATGAGGAACTGACGCTATCTGTACCTCAATCTTTTGGATCCTTAAAGTTGCAAGTATACGATTATGACACGTTTTCAGCAGACGACATAATGGGAGAAGCAGACATTGATCTCCAGCCCTTGATAACATCCGCAATGGCATTTGGAGATGCTGGATTGTTTTCAAATATGCAAATTGGAAAATGGCTGAAATCGCACGATAATGCTCTCATGAGCGATAGCACCGTTAATATTGTCGATGGGAAGGTGAAGCAAGAGATGACACTCAAGCTTCAGAATGTGGAATCAGGAGAACTAGATCTAGAGCTGGAATGGATGGCCTCTTGA 966 42.03 MELGRPGSGKRRLRDLLLLKDNRFCADCRASDPKWASANIGVFICLKCCGVHRSLGAHISKVLSVTLDEWNDDEIDAMIEIGGNSSANAIYEAFIPDGFSKPGPDASHEQRSRFIRSKYELQEFLKPSLRISSAHSDKSNIQANFATRVMNSFRSSQKQEGMVDFIGLLKVKVIKGTNLAIRDMMTSDPYVVLTLGRQTVQTCVVASNLNPVWNEELTLSVPQSFGSLKLQVYDYDTFSADDIMGEADIDLQPLITSAMAFGDAGLFSNMQIGKWLKSHDNALMSDSTVNIVDGKVKQEMTLKLQNVESGELDLELEWMAS 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10467242 10471608 + CmoCh03G014450.1 Cmo03g01445 378908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01445 321 Gene3D C2 domain 165 321 IPR035892 -
Cmo03g01445 321 CDD C2_ArfGAP 166 310 - -
Cmo03g01445 321 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 138 IPR001164 GO:0005096
Cmo03g01445 321 PRINTS C2 domain signature 183 195 IPR000008 -
Cmo03g01445 321 PRINTS C2 domain signature 207 220 IPR000008 -
Cmo03g01445 321 PRINTS C2 domain signature 228 236 IPR000008 -
Cmo03g01445 321 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Cmo03g01445 321 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Cmo03g01445 321 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Cmo03g01445 321 CDD ArfGap 22 119 - -
Cmo03g01445 321 Pfam C2 domain 167 257 IPR000008 -
Cmo03g01445 321 Pfam Putative GTPase activating protein for Arf 11 126 IPR001164 GO:0005096
Cmo03g01445 321 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 164 260 IPR035892 -
Cmo03g01445 321 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 3 320 IPR044518 GO:0005096|GO:0005543
Cmo03g01445 321 SMART arf_gap_3 10 132 IPR001164 GO:0005096
Cmo03g01445 321 ProSiteProfiles C2 domain profile. 149 264 IPR000008 -
Cmo03g01445 321 SUPERFAMILY ArfGap/RecO-like zinc finger 10 127 IPR037278 -
Cmo03g01445 321 Gene3D Arf GTPase activating protein 5 131 IPR038508 -
Cmo03g01445 321 SMART C2_3c 168 263 IPR000008 -
Cmo03g01445 321 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 3 320 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g01445 Cmo13g00522 CCT
Cmo03g01445 Cmo18g00486 CCT
Cmo03g01445 Cmo07g00063 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01445 Cmo-Chr3:10467242 Cmo15g00846 Cmo-Chr15:4284174 3.17E-115 dispersed
Cmo18g00070 Cmo-Chr18:476172 Cmo03g01445 Cmo-Chr3:10467242 1.67E-26 dispersed
Cmo13g00522 Cmo-Chr13:6123425 Cmo03g01445 Cmo-Chr3:10467242 4.25E-170 wgd
Cmo18g00486 Cmo-Chr18:3337349 Cmo03g01445 Cmo-Chr3:10467242 5.84E-159 wgd
Cmo03g01445 Cmo-Chr3:10467242 Cmo07g00063 Cmo-Chr7:358765 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01445 K12486 - csv:101218116 580.867