Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01464 ATGGAGAATTACGAAGGCGATTTGAGTGATATTGTGAGAGGAGGAGGAAGGAGAATTCCTACGGATGCAAATCACAAGATGTTGCCCACCAACCCTTTTGTTCATCACAACAATCTTGGGAATTTTCATCCAAACATGAAGATGAATTCAGTTTCGGGGATCCCTTTTGTGGTGCACCCATCAGAGATCCACTTGTCGAGGACAGAGGAAGTGTGTTGTTTGGTGTGGATGAAGACGATGAGCTTATCAAACCACCCTCCAATGTATTCTCACGCATGCTTCAACACTTACTTCTTCCCCTTCCAATTTCCTAATTCCTTCTCCCCTTCACATCTCTTCTCCTACCAAGCCGCCTGGTGTCAACCCAAGGTAACTCACGAGCTGATTTTTATAGGACAAAAACTAGGGAAGAGGCAAGCGAGGAAGGTGGTGTGTGTTCCTGCTCCAGTGGGTGGCAGTAGCAGCCGCAGCAGCAGCAGACCAAATGGGGAACTTATTCCTTCTGATCTGTGGGCTTGGAGGAAATATGGTCAGAAACCCATTAAAGGCTCTCCCTATCCTAGATGCAGCAGCTCAAAGGGTTGTTCGGCCAGAAAACAAGTGGAGAGAAGTAGAACAGATCCCAACATGCTGGTGATTACTTACACATCCGAGCACAACCATCCATGGCCAACTCAGAGAAACGCTCTAGCAGGCTCTTCAAGGTCCCAACACTCCAAACACAATTCTTCTTCAAAGCCCTCTCCCGCTACACCTCAAACCCCAACAACAATAATCCAGGAAGATCAAACCAAGAATGAAGCAACGAGATCATCACCATCATCATCAAATAACAAGGTTAAGGAAGAAGTTGTTGAGGAGATTGAGAAACAGTTGGAAACAGAAGAGCATCATGAATTGAGTGAAGGGTTTCAATATAGGGTGCCTGCAATGCCAAGCAATACCACCAACAACAATCAAAGCGATGATTTTTTTGCAGATTTGGAAGAATTAGACACCCACTCTTTAACCCTCTTCTTCACTCGACCCCACAAATCAGAGCAATGCAAAGGGGGCGGTGGGTTAGACGACGTCCTTGCATTCAATCCTCCCTTTGATTGGCCACCACCTCAAAACAACAACAACAACAATTCACAAATTCCATGA 1146 45.72 MENYEGDLSDIVRGGGRRIPTDANHKMLPTNPFVHHNNLGNFHPNMKMNSVSGIPFVVHPSEIHLSRTEEVCCLVWMKTMSLSNHPPMYSHACFNTYFFPFQFPNSFSPSHLFSYQAAWCQPKVTHELIFIGQKLGKRQARKVVCVPAPVGGSSSRSSSRPNGELIPSDLWAWRKYGQKPIKGSPYPRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSSRSQHSKHNSSSKPSPATPQTPTTIIQEDQTKNEATRSSPSSSNNKVKEEVVEEIEKQLETEEHHELSEGFQYRVPAMPSNTTNNNQSDDFFADLEELDTHSLTLFFTRPHKSEQCKGGGGLDDVLAFNPPFDWPPPQNNNNNNSQIP 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10534462 10536078 - CmoCh03G014640.1 Cmo03g01464 378927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01464 381 Coils Coil 278 298 - -
Cmo03g01464 381 MobiDBLite consensus disorder prediction 183 300 - -
Cmo03g01464 381 SMART WRKY_cls 167 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo03g01464 381 MobiDBLite consensus disorder prediction 280 300 - -
Cmo03g01464 381 Gene3D WRKY domain 153 225 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo03g01464 381 MobiDBLite consensus disorder prediction 345 381 - -
Cmo03g01464 381 ProSiteProfiles WRKY domain profile. 162 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo03g01464 381 MobiDBLite consensus disorder prediction 207 279 - -
Cmo03g01464 381 SUPERFAMILY WRKY DNA-binding domain 166 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo03g01464 381 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 137 347 IPR044810 GO:0003700
Cmo03g01464 381 Pfam WRKY DNA -binding domain 169 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo03g01464 381 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 137 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01464 Cmo-Chr3:10534462 Cmo06g01113 Cmo-Chr6:8571167 4.81E-34 dispersed
Cmo18g00508 Cmo-Chr18:3605353 Cmo03g01464 Cmo-Chr3:10534462 3.32E-49 wgd
Cmo03g01464 Cmo-Chr3:10534462 Cmo07g00048 Cmo-Chr7:306947 3.93E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9487 PF03106 WRKY 1.50E-18 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01464 - - cmos:111433033 567.385