Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo03g01466 | ATGGATTCAGCAAGGAGTTGGTTTCAGAAGTTCCAATATAAAGAAAAGAAGGAGACTGTAAGTGAGAATGAGGTTCAAGATGTACCATCAAGTGCGACAAAACAGAAAGTGGAGGTTGCCAAGCAATATATCGAAAACCATTACAAATCTCAAATGAAGTCATTGCAAGATAGGAAGGAGAGACGTTGGGTGTTGGAGAGGAGGCTTGCTGATGCCGATGCTTCTGAGGAAGACCAAATAAACGTTCTTAAATATTTAGAACAGAAGGAGACTGAGTACATGCGTCTTCGTAGACATAAAATGGGTGTTGATGACTTTGAACTTTTGACAATTATAGGAAGGGGGGCATTTGGGGAGGTTAGACTTTGTAGAGAAAAAGCCACAGGTCACGTGTATGCAATGAAGAAGCTTAAGAAGTCTGAGATGCTTCGCAGGGGGCAGGTGGAACATGTCAAAGCTGAAAGAAATCTTCTAGCAGAGGTTGACAGTGCCTACATTGTGAAGTTATACTGCTCCTTTCAGGATGAGGATTTTTTGTATCTTATAATGCAATATCTTCCTGGAGGTGATATGATGACTCTGTTAATGCGCAAGGACATTTTGACGGAGGATGAGGCTAGATTTTATGTTGGGGAAACAGTCCTTGCTATAGAGTCCATTCACAAGCATAATTACATTCACAGAGACATCAAGCCTGATAATTTACTGCTTGATCGTTATGGGCACATTAAACTCTCAGATTTTGGGTTGTGTAAACCCTTGGAGTCTAGCAGTTTCCCTAATCTCACCGAGCAAGAAAATATAGTGGGGAACAATGTCAGATCTCCTGATAATCAAAATAGTGTGTCGAAACGAACACAACAAGAGCAATTGTTACATTGGCAAAAGAACAGACGAACATTGGCTTATTCTGCTGTTGGAACGCCGGACTATATTGCCCCAGAAGTGTTATTGAGGAAAGGATATGGAATTGAGTGCGACTGGTGGTCCCTTGGTGCAATTATGTACGAAATGCTTGTGGGATTTCCACCTTTCTATTCTGATGATCCAATGTCTACTTGTAGAAAGATCATTAACTGGAGAACTCATTTGAGATTCCCAAAAGAAGCAAAACTTTCCTTTGAGGCCAAAGATCTTATTTGCAAACTTTTATGCAATGTTGAGCAAAGAATTGGAACCAAAGGAGCTATAGAAATTAAGGCGCATCCATGGTTTAAAGGGATACAATGGGATAAATTATATCAAATGGAAGCTGTTATCATCCCAGAGATCCATGATGAGTTAGACACTCGAAATTTTGAGAAGTATGAAGAGCTGGGTGTGCCAGGTCAAACTCCATCAAAGTCGGGTCCTTTGAGAAAGAAGCTTTCACCCAAGGATGTAAACTTTGTTGGTTATACGTACAAGAATTTTGAAATTGTCAACGAACACCACTTGTCTGGCATTACTGAGACGAGGAAAAAGCTTAACAAGACCAAGAGACCATCTGTTACCACTCTATTTGCCACAGCAGATTCTTCAGAGCAGCCTGTTCAAAGAAGTTTTCCTAATCATTTGCCAACCCATCTCGAAGTCTCGGAAAGCCCCGATCCATCACCTCGTTCAACTGGATCACTGCAACAGCAGCAGAAGCGATGGGGAAAATGA | 1647 | 41.17 | MDSARSWFQKFQYKEKKETVSENEVQDVPSSATKQKVEVAKQYIENHYKSQMKSLQDRKERRWVLERRLADADASEEDQINVLKYLEQKETEYMRLRRHKMGVDDFELLTIIGRGAFGEVRLCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSAYIVKLYCSFQDEDFLYLIMQYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHIKLSDFGLCKPLESSSFPNLTEQENIVGNNVRSPDNQNSVSKRTQQEQLLHWQKNRRTLAYSAVGTPDYIAPEVLLRKGYGIECDWWSLGAIMYEMLVGFPPFYSDDPMSTCRKIINWRTHLRFPKEAKLSFEAKDLICKLLCNVEQRIGTKGAIEIKAHPWFKGIQWDKLYQMEAVIIPEIHDELDTRNFEKYEELGVPGQTPSKSGPLRKKLSPKDVNFVGYTYKNFEIVNEHHLSGITETRKKLNKTKRPSVTTLFATADSSEQPVQRSFPNHLPTHLEVSESPDPSPRSTGSLQQQQKRWGK | 548 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 10538177 | 10544117 | - | CmoCh03G014660.1 | Cmo03g01466 | 378929 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo03g01466 | 548 | Pfam | Protein kinase domain | 107 | 405 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo03g01466 | 548 | SUPERFAMILY | Protein kinase-like (PK-like) | 87 | 452 | IPR011009 | - | |
Cmo03g01466 | 548 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 28 | 508 | - | - | |
Cmo03g01466 | 548 | SMART | pkinase_C_6 | 406 | 470 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Cmo03g01466 | 548 | SMART | serkin_6 | 106 | 405 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo03g01466 | 548 | MobiDBLite | consensus disorder prediction | 528 | 548 | - | - | |
Cmo03g01466 | 548 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 225 | 237 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo03g01466 | 548 | ProSiteProfiles | Protein kinase domain profile. | 106 | 405 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo03g01466 | 548 | Gene3D | Phosphorylase Kinase; domain 1 | 424 | 434 | - | - | |
Cmo03g01466 | 548 | Gene3D | Phosphorylase Kinase; domain 1 | 104 | 189 | - | - | |
Cmo03g01466 | 548 | ProSitePatterns | Protein kinases ATP-binding region signature. | 112 | 135 | IPR017441 | GO:0005524 | |
Cmo03g01466 | 548 | MobiDBLite | consensus disorder prediction | 501 | 521 | - | - | |
Cmo03g01466 | 548 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 28 | 508 | - | - | |
Cmo03g01466 | 548 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 406 | 478 | IPR000961 | GO:0004674|GO:0005524|GO:0006468 | |
Cmo03g01466 | 548 | CDD | STKc_NDR_like | 104 | 469 | - | - | |
Cmo03g01466 | 548 | Gene3D | Transferase(Phosphotransferase) domain 1 | 300 | 423 | - | - | |
Cmo03g01466 | 548 | Gene3D | Transferase(Phosphotransferase) domain 1 | 190 | 258 | - | - | |
Cmo03g01466 | 548 | MobiDBLite | consensus disorder prediction | 501 | 548 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g01466 | Cmo-Chr3:10538177 | Cmo17g00156 | Cmo-Chr17:904544 | 0 | dispersed | |
Cmo03g01466 | Cmo-Chr3:10538177 | Cmo08g01054 | Cmo-Chr8:6806948 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74219 | PF00069 | Pkinase | 9.10E-64 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo03g01466 | K08790 | - | csv:101208438 | 1027.7 |