Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01466 ATGGATTCAGCAAGGAGTTGGTTTCAGAAGTTCCAATATAAAGAAAAGAAGGAGACTGTAAGTGAGAATGAGGTTCAAGATGTACCATCAAGTGCGACAAAACAGAAAGTGGAGGTTGCCAAGCAATATATCGAAAACCATTACAAATCTCAAATGAAGTCATTGCAAGATAGGAAGGAGAGACGTTGGGTGTTGGAGAGGAGGCTTGCTGATGCCGATGCTTCTGAGGAAGACCAAATAAACGTTCTTAAATATTTAGAACAGAAGGAGACTGAGTACATGCGTCTTCGTAGACATAAAATGGGTGTTGATGACTTTGAACTTTTGACAATTATAGGAAGGGGGGCATTTGGGGAGGTTAGACTTTGTAGAGAAAAAGCCACAGGTCACGTGTATGCAATGAAGAAGCTTAAGAAGTCTGAGATGCTTCGCAGGGGGCAGGTGGAACATGTCAAAGCTGAAAGAAATCTTCTAGCAGAGGTTGACAGTGCCTACATTGTGAAGTTATACTGCTCCTTTCAGGATGAGGATTTTTTGTATCTTATAATGCAATATCTTCCTGGAGGTGATATGATGACTCTGTTAATGCGCAAGGACATTTTGACGGAGGATGAGGCTAGATTTTATGTTGGGGAAACAGTCCTTGCTATAGAGTCCATTCACAAGCATAATTACATTCACAGAGACATCAAGCCTGATAATTTACTGCTTGATCGTTATGGGCACATTAAACTCTCAGATTTTGGGTTGTGTAAACCCTTGGAGTCTAGCAGTTTCCCTAATCTCACCGAGCAAGAAAATATAGTGGGGAACAATGTCAGATCTCCTGATAATCAAAATAGTGTGTCGAAACGAACACAACAAGAGCAATTGTTACATTGGCAAAAGAACAGACGAACATTGGCTTATTCTGCTGTTGGAACGCCGGACTATATTGCCCCAGAAGTGTTATTGAGGAAAGGATATGGAATTGAGTGCGACTGGTGGTCCCTTGGTGCAATTATGTACGAAATGCTTGTGGGATTTCCACCTTTCTATTCTGATGATCCAATGTCTACTTGTAGAAAGATCATTAACTGGAGAACTCATTTGAGATTCCCAAAAGAAGCAAAACTTTCCTTTGAGGCCAAAGATCTTATTTGCAAACTTTTATGCAATGTTGAGCAAAGAATTGGAACCAAAGGAGCTATAGAAATTAAGGCGCATCCATGGTTTAAAGGGATACAATGGGATAAATTATATCAAATGGAAGCTGTTATCATCCCAGAGATCCATGATGAGTTAGACACTCGAAATTTTGAGAAGTATGAAGAGCTGGGTGTGCCAGGTCAAACTCCATCAAAGTCGGGTCCTTTGAGAAAGAAGCTTTCACCCAAGGATGTAAACTTTGTTGGTTATACGTACAAGAATTTTGAAATTGTCAACGAACACCACTTGTCTGGCATTACTGAGACGAGGAAAAAGCTTAACAAGACCAAGAGACCATCTGTTACCACTCTATTTGCCACAGCAGATTCTTCAGAGCAGCCTGTTCAAAGAAGTTTTCCTAATCATTTGCCAACCCATCTCGAAGTCTCGGAAAGCCCCGATCCATCACCTCGTTCAACTGGATCACTGCAACAGCAGCAGAAGCGATGGGGAAAATGA 1647 41.17 MDSARSWFQKFQYKEKKETVSENEVQDVPSSATKQKVEVAKQYIENHYKSQMKSLQDRKERRWVLERRLADADASEEDQINVLKYLEQKETEYMRLRRHKMGVDDFELLTIIGRGAFGEVRLCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSAYIVKLYCSFQDEDFLYLIMQYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHIKLSDFGLCKPLESSSFPNLTEQENIVGNNVRSPDNQNSVSKRTQQEQLLHWQKNRRTLAYSAVGTPDYIAPEVLLRKGYGIECDWWSLGAIMYEMLVGFPPFYSDDPMSTCRKIINWRTHLRFPKEAKLSFEAKDLICKLLCNVEQRIGTKGAIEIKAHPWFKGIQWDKLYQMEAVIIPEIHDELDTRNFEKYEELGVPGQTPSKSGPLRKKLSPKDVNFVGYTYKNFEIVNEHHLSGITETRKKLNKTKRPSVTTLFATADSSEQPVQRSFPNHLPTHLEVSESPDPSPRSTGSLQQQQKRWGK 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10538177 10544117 - CmoCh03G014660.1 Cmo03g01466 378929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01466 548 Pfam Protein kinase domain 107 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01466 548 SUPERFAMILY Protein kinase-like (PK-like) 87 452 IPR011009 -
Cmo03g01466 548 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 508 - -
Cmo03g01466 548 SMART pkinase_C_6 406 470 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cmo03g01466 548 SMART serkin_6 106 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01466 548 MobiDBLite consensus disorder prediction 528 548 - -
Cmo03g01466 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Cmo03g01466 548 ProSiteProfiles Protein kinase domain profile. 106 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo03g01466 548 Gene3D Phosphorylase Kinase; domain 1 424 434 - -
Cmo03g01466 548 Gene3D Phosphorylase Kinase; domain 1 104 189 - -
Cmo03g01466 548 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524
Cmo03g01466 548 MobiDBLite consensus disorder prediction 501 521 - -
Cmo03g01466 548 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 28 508 - -
Cmo03g01466 548 ProSiteProfiles AGC-kinase C-terminal domain profile. 406 478 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cmo03g01466 548 CDD STKc_NDR_like 104 469 - -
Cmo03g01466 548 Gene3D Transferase(Phosphotransferase) domain 1 300 423 - -
Cmo03g01466 548 Gene3D Transferase(Phosphotransferase) domain 1 190 258 - -
Cmo03g01466 548 MobiDBLite consensus disorder prediction 501 548 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01466 Cmo-Chr3:10538177 Cmo17g00156 Cmo-Chr17:904544 0 dispersed
Cmo03g01466 Cmo-Chr3:10538177 Cmo08g01054 Cmo-Chr8:6806948 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74219 PF00069 Pkinase 9.10E-64 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01466 K08790 - csv:101208438 1027.7