Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo03g01479 | ATGGGGAAGAAGAAGAAGAGGGTGTCGTCTAAGGTATGGTGCTATTATTGCGACAGAGAATTCGACGACGAGAAGATATTGGTGCAGCATCAGAAGGCCAAACACTTCAAGTGCCATGTCTGTCACAAGAAGCTTTCTACTGCTGGTGGTATGGTCATCCACGTTCTTCAGGTTCACAAGGAGTCGGTCACCAAAGTTCCTAATGCAAAACCAGGCAGAGAATCGACAGATATTGAAATATATGGAATGCAAGGAATTCCTCCCGATGTCTTGGCAGCACACTATGGCGAGGACGAAGAAGAGTCCTTATCAAAGGTGGCCAAAGTGGAGATGCCACCGACTCAGATGGTTGGAGGTGTGGTGCCCGGATCGCTGGGCATTGTATACCCTCCTCAGCCAGGTTTAGCTGCAATTCAACCTATTTATCCTTCGACTGGACAAGCACAGCCTACTGCCTGGCCGGTTCCACCTCGTCCCCAACCTTGGTTCCCTCCAAATTCAGCCGTTTCAATTTCGGCTCCTGCCCCATTGGGCTATGCTCAGCAGCCACTATTTCCTGTGCAGACTGCAAGGCCCTCACTTCCAGTATCATCAACTCCTATGCTCCAGTCTTCACAAATAACACATCCTGGATTGACTTCAACCACACCTTCAGTTTCTGTATCTCAGCCGTTGTTCCCTGTTGTTAATAATAACCACGGACCTACTCAAAGCTCTCCTTTTCCTTCATCTACACTTTCAACAAGCATTCCTTTGACCTCAGCAGCAGATATCAAGGGCTCAGTGACACATCTGGGCACTAACTCCTTTTCTACTATCAGCAATCAGGTTCCAAATGTTCCAGGTGGAATATTAAGCAATTCACACTCCTATGCCTCGGGACCAAATACGGGTGGTCCTTCTATCGGACCACCTCCTGTAATTGCAAATAAGGCTCCTACTCAGCCATCAACAAACGAAGTATATTTGGTTTGGGATGATGAGGCGATGTCTATGGAGGAAAGAAGAATGTCCTTAACCAAGTATCAGGTGCATGATGAAACTAGCCAGTTTGCACGCCATACCACCAATCTTGTGGCATCAAAAGGCTCAAGTAGGGCTCTGAGAATAGCCACGACGATTTCTTCTCGATCCCACCAGACTTTCCTCATAAATCCATTGTTTTCCCATCGATGTTACTCTGCCCAACCTGAGCAAGACGATCCGAATCACAACCCTACTTTCTCGGACACTGAAAATGCTCCGGATTCTGTATTTGATAGTTCGCAGTTCACTATTCCAAACATGGATTCGTGTACTAAAACTGAGTCTCACTCCCCTGCCGAATCCACTTGGGATAAAAAATACAGGGCAAGAGCTGACAAACTGATATTTGGGGAAGAATCCGAGGGAGTAAAATACAAGATAATGGAGGAGGAGGAGGAAAGGAGACGGAGAGTGCTTGCCAAGGCTCTGCTTGAGGCGGCGTTGGAAACTGCTGACGATCAGGAAGAAGATGACGAGAGAACGGTGAAGGAGGAGGACCAGAAGTCCCTGGCTGTTGGGATAATTGGAGCACCAAACGCTGGCAAGTCCGCGTTGACAAACTTTATGGTGGGAACTAAAGTTGCTGCAGTTTCACGGAAGACAAATACCACTACTCACGAAGTCCTAGGAATAATGACCAAAGGAAATACCCAAATTTGTTTCTTCGACACACCAGGGCTTATGTTAAAGAGTAAGGGACTTCCTTATAAAGACATGAAAGTGCGTGTGCAAAGTGCTTGGAGTTCAGTTCAACTTTATGATGTGTTGATAGTTATTTTTGACGTCCACAGACATCTTACAAGTCTTGTGGTCAGCTCTAATGGTTTAGCAGTTATCTCTTGGATTTTCTATAGGCCTGATTCAAGGGTGGTAGGATTGATCAAACGAATGGGAGCTTCATCACAACCAAAGCAGAAGCGAATATTATGTATGAACAAAGTTGATTTAGTCGAAAACAAGAAAGACTTGTTAACAGTTGCAGAACAATTTAAAGATCTTCCCGGATATGAAAGGTATTATTGGTTCTTGTTTAGAATGTTGACTCGCTTAGAGGCAGTCAAAAGACCTTGGGATGAAGATCCATACACTATGAATGAAGAAATGATGAAGAACATATCACTTGAAGTTGTTCGGGAGCGGTTGTTAGACCATGTGCATCAGGAAATTCCTTATGGAATCGAACATCGCCTGGTTGATTGGAAAGAATTTCGAGACGGTTCTCTTAGGATTGAGCAACACTTGATCACTAATAAACCAAGTCAGCGCAAAATTCTTGTGGGGAAAAATGGCTGTAAAATTGGGAGAATAGGTATTGAAGCAAATGAAGAGCTAAGGTCTATCTTCAAGAAACAAGTGCATCTCATCCTCCAACATAATGCCAAGGTGTTTCAGTTTCTAAATGACGAAAGGCATCTTCGCATTGGTACCCAACAACAAACTAGGATGAAATCTCGTCTATTTCTTTGGAAGATATTCTCAGAACTTTTGCAGCTCAAGGAGGGTTATTATTTGGTAGCAAGGATTCAAAATCCCAAGGATTCAAAATCCCAAGAATATAAGCCATGGCCATACATGTCTACGCAAACATGGAAATTCGAATCATGA | 2631 | 44.24 | MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDVLAAHYGEDEEESLSKVAKVEMPPTQMVGGVVPGSLGIVYPPQPGLAAIQPIYPSTGQAQPTAWPVPPRPQPWFPPNSAVSISAPAPLGYAQQPLFPVQTARPSLPVSSTPMLQSSQITHPGLTSTTPSVSVSQPLFPVVNNNHGPTQSSPFPSSTLSTSIPLTSAADIKGSVTHLGTNSFSTISNQVPNVPGGILSNSHSYASGPNTGGPSIGPPPVIANKAPTQPSTNEVYLVWDDEAMSMEERRMSLTKYQVHDETSQFARHTTNLVASKGSSRALRIATTISSRSHQTFLINPLFSHRCYSAQPEQDDPNHNPTFSDTENAPDSVFDSSQFTIPNMDSCTKTESHSPAESTWDKKYRARADKLIFGEESEGVKYKIMEEEEERRRRVLAKALLEAALETADDQEEDDERTVKEEDQKSLAVGIIGAPNAGKSALTNFMVGTKVAAVSRKTNTTTHEVLGIMTKGNTQICFFDTPGLMLKSKGLPYKDMKVRVQSAWSSVQLYDVLIVIFDVHRHLTSLVVSSNGLAVISWIFYRPDSRVVGLIKRMGASSQPKQKRILCMNKVDLVENKKDLLTVAEQFKDLPGYERYYWFLFRMLTRLEAVKRPWDEDPYTMNEEMMKNISLEVVRERLLDHVHQEIPYGIEHRLVDWKEFRDGSLRIEQHLITNKPSQRKILVGKNGCKIGRIGIEANEELRSIFKKQVHLILQHNAKVFQFLNDERHLRIGTQQQTRMKSRLFLWKIFSELLQLKEGYYLVARIQNPKDSKSQEYKPWPYMSTQTWKFES | 876 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 10623931 | 10633984 | - | CmoCh03G014790.1 | Cmo03g01479 | 378942 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo03g01479 | 876 | ProSiteProfiles | Zinc finger BED-type profile. | 7 | 66 | IPR003656 | GO:0003677 | |
Cmo03g01479 | 876 | TIGRFAM | era: GTP-binding protein Era | 513 | 799 | IPR005662 | GO:0003723|GO:0005525 | |
Cmo03g01479 | 876 | PANTHER | GTPASE ERA | 395 | 801 | IPR005662 | GO:0003723|GO:0005525 | |
Cmo03g01479 | 876 | MobiDBLite | consensus disorder prediction | 393 | 445 | - | - | |
Cmo03g01479 | 876 | Gene3D | - | 707 | 817 | IPR015946 | - | |
Cmo03g01479 | 876 | Gene3D | - | 506 | 697 | IPR027417 | - | |
Cmo03g01479 | 876 | PANTHER | GTPASE ERA, MITOCHONDRIAL | 395 | 801 | - | - | |
Cmo03g01479 | 876 | SUPERFAMILY | Prokaryotic type KH domain (KH-domain type II) | 711 | 799 | IPR009019 | GO:0003723 | |
Cmo03g01479 | 876 | Gene3D | Classic Zinc Finger | 2 | 66 | - | - | |
Cmo03g01479 | 876 | ProSiteProfiles | Type-2 KH domain profile. | 727 | 802 | IPR004044 | GO:0003723 | |
Cmo03g01479 | 876 | SMART | c2h2final6 | 12 | 35 | IPR013087 | - | |
Cmo03g01479 | 876 | SMART | c2h2final6 | 36 | 59 | IPR013087 | - | |
Cmo03g01479 | 876 | Pfam | 50S ribosome-binding GTPase | 514 | 609 | IPR006073 | GO:0005525 | |
Cmo03g01479 | 876 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 38 | 59 | IPR013087 | - | |
Cmo03g01479 | 876 | CDD | Era | 509 | 680 | IPR030388 | GO:0005525 | |
Cmo03g01479 | 876 | MobiDBLite | consensus disorder prediction | 396 | 439 | - | - | |
Cmo03g01479 | 876 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 14 | 35 | IPR013087 | - | |
Cmo03g01479 | 876 | Hamap | GTPase Era [era]. | 509 | 818 | IPR005662 | GO:0003723|GO:0005525 | |
Cmo03g01479 | 876 | ProSiteProfiles | Era-type guanine nucleotide-binding (G) domain profile. | 510 | 733 | IPR030388 | GO:0005525 | |
Cmo03g01479 | 876 | Pfam | KH domain | 730 | 798 | IPR004044 | GO:0003723 | |
Cmo03g01479 | 876 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 511 | 679 | IPR027417 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo16g00686 | Cmo-Chr16:3392276 | Cmo03g01479 | Cmo-Chr3:10623931 | 8.37E-17 | transposed | |
Cmo03g01479 | Cmo-Chr3:10623931 | Cmo07g00034 | Cmo-Chr7:216905 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9489 | PF01926 | MMR_HSR1 | 8.20E-15 | CL0023 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo03g01479 | K03595 | - | csv:101207216 | 656.751 |