Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01479 ATGGGGAAGAAGAAGAAGAGGGTGTCGTCTAAGGTATGGTGCTATTATTGCGACAGAGAATTCGACGACGAGAAGATATTGGTGCAGCATCAGAAGGCCAAACACTTCAAGTGCCATGTCTGTCACAAGAAGCTTTCTACTGCTGGTGGTATGGTCATCCACGTTCTTCAGGTTCACAAGGAGTCGGTCACCAAAGTTCCTAATGCAAAACCAGGCAGAGAATCGACAGATATTGAAATATATGGAATGCAAGGAATTCCTCCCGATGTCTTGGCAGCACACTATGGCGAGGACGAAGAAGAGTCCTTATCAAAGGTGGCCAAAGTGGAGATGCCACCGACTCAGATGGTTGGAGGTGTGGTGCCCGGATCGCTGGGCATTGTATACCCTCCTCAGCCAGGTTTAGCTGCAATTCAACCTATTTATCCTTCGACTGGACAAGCACAGCCTACTGCCTGGCCGGTTCCACCTCGTCCCCAACCTTGGTTCCCTCCAAATTCAGCCGTTTCAATTTCGGCTCCTGCCCCATTGGGCTATGCTCAGCAGCCACTATTTCCTGTGCAGACTGCAAGGCCCTCACTTCCAGTATCATCAACTCCTATGCTCCAGTCTTCACAAATAACACATCCTGGATTGACTTCAACCACACCTTCAGTTTCTGTATCTCAGCCGTTGTTCCCTGTTGTTAATAATAACCACGGACCTACTCAAAGCTCTCCTTTTCCTTCATCTACACTTTCAACAAGCATTCCTTTGACCTCAGCAGCAGATATCAAGGGCTCAGTGACACATCTGGGCACTAACTCCTTTTCTACTATCAGCAATCAGGTTCCAAATGTTCCAGGTGGAATATTAAGCAATTCACACTCCTATGCCTCGGGACCAAATACGGGTGGTCCTTCTATCGGACCACCTCCTGTAATTGCAAATAAGGCTCCTACTCAGCCATCAACAAACGAAGTATATTTGGTTTGGGATGATGAGGCGATGTCTATGGAGGAAAGAAGAATGTCCTTAACCAAGTATCAGGTGCATGATGAAACTAGCCAGTTTGCACGCCATACCACCAATCTTGTGGCATCAAAAGGCTCAAGTAGGGCTCTGAGAATAGCCACGACGATTTCTTCTCGATCCCACCAGACTTTCCTCATAAATCCATTGTTTTCCCATCGATGTTACTCTGCCCAACCTGAGCAAGACGATCCGAATCACAACCCTACTTTCTCGGACACTGAAAATGCTCCGGATTCTGTATTTGATAGTTCGCAGTTCACTATTCCAAACATGGATTCGTGTACTAAAACTGAGTCTCACTCCCCTGCCGAATCCACTTGGGATAAAAAATACAGGGCAAGAGCTGACAAACTGATATTTGGGGAAGAATCCGAGGGAGTAAAATACAAGATAATGGAGGAGGAGGAGGAAAGGAGACGGAGAGTGCTTGCCAAGGCTCTGCTTGAGGCGGCGTTGGAAACTGCTGACGATCAGGAAGAAGATGACGAGAGAACGGTGAAGGAGGAGGACCAGAAGTCCCTGGCTGTTGGGATAATTGGAGCACCAAACGCTGGCAAGTCCGCGTTGACAAACTTTATGGTGGGAACTAAAGTTGCTGCAGTTTCACGGAAGACAAATACCACTACTCACGAAGTCCTAGGAATAATGACCAAAGGAAATACCCAAATTTGTTTCTTCGACACACCAGGGCTTATGTTAAAGAGTAAGGGACTTCCTTATAAAGACATGAAAGTGCGTGTGCAAAGTGCTTGGAGTTCAGTTCAACTTTATGATGTGTTGATAGTTATTTTTGACGTCCACAGACATCTTACAAGTCTTGTGGTCAGCTCTAATGGTTTAGCAGTTATCTCTTGGATTTTCTATAGGCCTGATTCAAGGGTGGTAGGATTGATCAAACGAATGGGAGCTTCATCACAACCAAAGCAGAAGCGAATATTATGTATGAACAAAGTTGATTTAGTCGAAAACAAGAAAGACTTGTTAACAGTTGCAGAACAATTTAAAGATCTTCCCGGATATGAAAGGTATTATTGGTTCTTGTTTAGAATGTTGACTCGCTTAGAGGCAGTCAAAAGACCTTGGGATGAAGATCCATACACTATGAATGAAGAAATGATGAAGAACATATCACTTGAAGTTGTTCGGGAGCGGTTGTTAGACCATGTGCATCAGGAAATTCCTTATGGAATCGAACATCGCCTGGTTGATTGGAAAGAATTTCGAGACGGTTCTCTTAGGATTGAGCAACACTTGATCACTAATAAACCAAGTCAGCGCAAAATTCTTGTGGGGAAAAATGGCTGTAAAATTGGGAGAATAGGTATTGAAGCAAATGAAGAGCTAAGGTCTATCTTCAAGAAACAAGTGCATCTCATCCTCCAACATAATGCCAAGGTGTTTCAGTTTCTAAATGACGAAAGGCATCTTCGCATTGGTACCCAACAACAAACTAGGATGAAATCTCGTCTATTTCTTTGGAAGATATTCTCAGAACTTTTGCAGCTCAAGGAGGGTTATTATTTGGTAGCAAGGATTCAAAATCCCAAGGATTCAAAATCCCAAGAATATAAGCCATGGCCATACATGTCTACGCAAACATGGAAATTCGAATCATGA 2631 44.24 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDVLAAHYGEDEEESLSKVAKVEMPPTQMVGGVVPGSLGIVYPPQPGLAAIQPIYPSTGQAQPTAWPVPPRPQPWFPPNSAVSISAPAPLGYAQQPLFPVQTARPSLPVSSTPMLQSSQITHPGLTSTTPSVSVSQPLFPVVNNNHGPTQSSPFPSSTLSTSIPLTSAADIKGSVTHLGTNSFSTISNQVPNVPGGILSNSHSYASGPNTGGPSIGPPPVIANKAPTQPSTNEVYLVWDDEAMSMEERRMSLTKYQVHDETSQFARHTTNLVASKGSSRALRIATTISSRSHQTFLINPLFSHRCYSAQPEQDDPNHNPTFSDTENAPDSVFDSSQFTIPNMDSCTKTESHSPAESTWDKKYRARADKLIFGEESEGVKYKIMEEEEERRRRVLAKALLEAALETADDQEEDDERTVKEEDQKSLAVGIIGAPNAGKSALTNFMVGTKVAAVSRKTNTTTHEVLGIMTKGNTQICFFDTPGLMLKSKGLPYKDMKVRVQSAWSSVQLYDVLIVIFDVHRHLTSLVVSSNGLAVISWIFYRPDSRVVGLIKRMGASSQPKQKRILCMNKVDLVENKKDLLTVAEQFKDLPGYERYYWFLFRMLTRLEAVKRPWDEDPYTMNEEMMKNISLEVVRERLLDHVHQEIPYGIEHRLVDWKEFRDGSLRIEQHLITNKPSQRKILVGKNGCKIGRIGIEANEELRSIFKKQVHLILQHNAKVFQFLNDERHLRIGTQQQTRMKSRLFLWKIFSELLQLKEGYYLVARIQNPKDSKSQEYKPWPYMSTQTWKFES 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10623931 10633984 - CmoCh03G014790.1 Cmo03g01479 378942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01479 876 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Cmo03g01479 876 TIGRFAM era: GTP-binding protein Era 513 799 IPR005662 GO:0003723|GO:0005525
Cmo03g01479 876 PANTHER GTPASE ERA 395 801 IPR005662 GO:0003723|GO:0005525
Cmo03g01479 876 MobiDBLite consensus disorder prediction 393 445 - -
Cmo03g01479 876 Gene3D - 707 817 IPR015946 -
Cmo03g01479 876 Gene3D - 506 697 IPR027417 -
Cmo03g01479 876 PANTHER GTPASE ERA, MITOCHONDRIAL 395 801 - -
Cmo03g01479 876 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 711 799 IPR009019 GO:0003723
Cmo03g01479 876 Gene3D Classic Zinc Finger 2 66 - -
Cmo03g01479 876 ProSiteProfiles Type-2 KH domain profile. 727 802 IPR004044 GO:0003723
Cmo03g01479 876 SMART c2h2final6 12 35 IPR013087 -
Cmo03g01479 876 SMART c2h2final6 36 59 IPR013087 -
Cmo03g01479 876 Pfam 50S ribosome-binding GTPase 514 609 IPR006073 GO:0005525
Cmo03g01479 876 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Cmo03g01479 876 CDD Era 509 680 IPR030388 GO:0005525
Cmo03g01479 876 MobiDBLite consensus disorder prediction 396 439 - -
Cmo03g01479 876 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Cmo03g01479 876 Hamap GTPase Era [era]. 509 818 IPR005662 GO:0003723|GO:0005525
Cmo03g01479 876 ProSiteProfiles Era-type guanine nucleotide-binding (G) domain profile. 510 733 IPR030388 GO:0005525
Cmo03g01479 876 Pfam KH domain 730 798 IPR004044 GO:0003723
Cmo03g01479 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 511 679 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00686 Cmo-Chr16:3392276 Cmo03g01479 Cmo-Chr3:10623931 8.37E-17 transposed
Cmo03g01479 Cmo-Chr3:10623931 Cmo07g00034 Cmo-Chr7:216905 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9489 PF01926 MMR_HSR1 8.20E-15 CL0023 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01479 K03595 - csv:101207216 656.751