Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo03g01486 ATGGCTCCGGGCCTCAGAGACCTCCAGCTTGCCCAGGTCGCCGCCGCTGACCGTCGCCTGCCGGATATTTCTTCTGCTGCTGCTGAACTTTCCGATGATCTTGAGGATGTGCGTTTGCTTGATTCCTATGAGAAGCAGGAGGAGAATTTGGGCGAAATTAAGAAAGGTCTGAGGAGGGTTCAGGTCTCAGTTTCTGGGATGACCTGCGCTGCTTGTTCTAATTCCGTGGAGGCTGCTTTGAGGGGCGTTAATGGCGTTTTGACGGCTTCCGTTGCATTGCTTCAGAACAGAGCTGACGTTGTTTTTGACTCCAGCTTGGTTAAGGTTTTTGAAGAAGATATCAAAGAAGCAATAGAAGATGCTGGATTCGAGGCTGAGATTATACCTGAAGCTCCTTCAGTTGGAAAGAAGTCGCATGGAACACTGGTGGGTCAATTTACCATCGGTGGTATGACATGTGCAGCATGTGTGAATTCGGTAGAGACCATTTTAAGAGATCTTCCTGGTGTTAGAAGAGCAGTAGTTGCTTTGGCCACATCATTGGGAGAAGTTGAATATGATCCTACAATTTCCAGTAAAGACGACATAGTTAATGCAATTGAGGATGCTGGATTTGAAGCTTCATTTGTACAGAGCAGTGAGCAAGATAAACTTTTACTAGCGGTTGCAGGCATTGCTGGCGAGGTTGATGTACAGTTTCTGGAAGTCATACTTAGCAACTTGAAAGGGTTGCGGCGGTTTCTCTTTGACAGTACATCAGGAACACTTGAGGTTATTTTTGACCCAGTAGTTGTTGGTCCCAGATCCTTAGTGGATGAGATTGAGGGAAGAAGCAACAGAAAATTTAAACTGCATGTTACCAGCCCTTACACGAGGTTAACGTCTAAAGATGTTGAAGAAGCTACGAAAATGTTTTGGCTCTTTATCCCCAGTCTGTTTCTCAGTGTACTGATCTTTCTCCAACAAGTAATATGTCCTCATATTCCTTTAATCTACGCATTGTTACTCTGGCGCTGTGGACCCTTTCTCATGGATGATTGGTTAAAGTGGGCATTGGTGACTGTTGTGCAATTCATCATTGGAAAGCGCTTTTATGTTGCAGCTGCTAGAGCTCTTCGAAATGGTTCAGCTAACATGGATGTCTTGGTTGCTTTGGGTACCACGGCCTCTTATGTCTATTCTGTTTGTGCACTTCTCTATGGTGCAGTCACCGGATTCTGGTCTCCTACTTATTTTGAAACAAGTGCTATGTTGATAACCTTTGTATTATTGGGAAAGTACTTGGAGTGTCTTGCCAAGGGGAAAACATCAGATGCCATCAAGAAGTTGGTAGAACTTGCTCCTGCAACTGCTTTATTGCTCATCCGGGATAAAGGTGGGAATTTGATAGAAGAAAGGGAAATAGATGCTCTGTTAATTCAACCTGGCGACATGTTGAAAGTTCTTCCTGGTACAAAGATTCCAGCGGATGGTGTTGTTAATTGGGGTTCCAGTTATGTTAATGAGAGTATGGTTACTGGAGAATCTGTACCTGTTTTGAAGGAGGTTAACTCACATGTTATTGGGGGTACAATTAACTTTCATGGAGCTCTTCACATCCAAGCAACGAAAGTAGGATCTGATACAGTTTTGAATCAGATTATTAGTTTGGTTGAGACAGCTCAGATGTCTAAAGCCCCAATTCAGAAGTTTGCTGATTTTGTAGCAAGTATATTCGTTCCTACCGTTGTTGCTATAGCATTGTGTACGTTATTTGGCTGGTATGTTGGAGGAATTCTTGGGGCTTATCCAGCTGAATGGCTCCCAGAAAATGGAAATTACTTCGTATTTTCCCTCATGTTTGCAATAGCAGTGGTAGTTATTGCATGTCCTTGTGCACTAGGCTTGGCCACGCCGACTGCTGTCATGGTTGCTACAGGGGTTGGTGCCAGCAATGGTGTCTTGATCAAAGGAGGAGACGCTTTGGAGAGGGCCCAAAAGGTTAAGTACGTGATTTTTGATAAAACAGGCACACTAACCCAAGGGAGAGCCACCGTCACTACTGCCAAAGTATTCACTGAAATTTCTCTAGGAGATTTTCTTAAGCTGGTTGCTTCAGCAGAGGCTAGCAGCGAACACCCTTTGGGAAAAGCTATAGTCGAGTATGCACGACATTTCCATTTCTTCGATGATCCTTCTGCAACAAAAAATGGGGAAAACCAAAGTAGAGAATCTTCTGGATGGCTTTTCGATGTCACAGATTTCTCTGCATTGCCAGGCCAAGGCATCCGGTGCGTTATTGAGGGAAAAAGGATTCTGGTTGGCAACAGGAAGTTGATGAATGAAAATGGAATCTCCATAGCACCTGATGTAGATAATTTCGTTATAGAGCTTGAAGAAAGTGCAAAGACAGGCATTCTTGTTGCATGCAATGATGACTTAATTGGAGTTTTGGGAATAGCAGATCCACTTAAGCGAGAAGCTGCCGTTGTTGTTGAGGGTCTTGTGAAAATGGGTGTTTCTCCAGTCATGGTTACGGGTGATAATTGGAGAACAGCTCGGGCTGTTGCCAAAGAGCTTGGTATAACAGATGTGAGGGCAGAAGTAATGCCGGCAGGAAAAGCCGAAGTGATTCACAACTTCCAAAAGGACGGAAGCACAGTTGCAATGGTAGGAGACGGTATCAACGACTCGCCTGCTCTCGCTGCATCTGATATCGGAATCGCAATTGGTGCGGGAACTGATATTGCCATTGAGGCAGCAGACTTTGTCCTGATGAGAAATAATTTAGAAGATGTAATTACAGCCATCGATCTGTCAAGGAAGACTTTCAATCGAATTCGGTTGAATTACGTGTTTGCAATGGCGTACAATGTAATAGCAATTCCTGTTGCTGCCGGAGTCCTGTTTCCTTCTTTGGGGATTAAATTGCCTCCATGGGCAGCCGGTGCATGCATGGCTTTGTCATCTGTAAGTGTCGTTTGCTCTTCTTTACTTCTTAGGAGATACAAAAGGCCAAGACTTACAACAATACTTAAAATAACTGTAGAATAG 3033 44.08 MAPGLRDLQLAQVAAADRRLPDISSAAAELSDDLEDVRLLDSYEKQEENLGEIKKGLRRVQVSVSGMTCAACSNSVEAALRGVNGVLTASVALLQNRADVVFDSSLVKVFEEDIKEAIEDAGFEAEIIPEAPSVGKKSHGTLVGQFTIGGMTCAACVNSVETILRDLPGVRRAVVALATSLGEVEYDPTISSKDDIVNAIEDAGFEASFVQSSEQDKLLLAVAGIAGEVDVQFLEVILSNLKGLRRFLFDSTSGTLEVIFDPVVVGPRSLVDEIEGRSNRKFKLHVTSPYTRLTSKDVEEATKMFWLFIPSLFLSVLIFLQQVICPHIPLIYALLLWRCGPFLMDDWLKWALVTVVQFIIGKRFYVAAARALRNGSANMDVLVALGTTASYVYSVCALLYGAVTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLLIRDKGGNLIEEREIDALLIQPGDMLKVLPGTKIPADGVVNWGSSYVNESMVTGESVPVLKEVNSHVIGGTINFHGALHIQATKVGSDTVLNQIISLVETAQMSKAPIQKFADFVASIFVPTVVAIALCTLFGWYVGGILGAYPAEWLPENGNYFVFSLMFAIAVVVIACPCALGLATPTAVMVATGVGASNGVLIKGGDALERAQKVKYVIFDKTGTLTQGRATVTTAKVFTEISLGDFLKLVASAEASSEHPLGKAIVEYARHFHFFDDPSATKNGENQSRESSGWLFDVTDFSALPGQGIRCVIEGKRILVGNRKLMNENGISIAPDVDNFVIELEESAKTGILVACNDDLIGVLGIADPLKREAAVVVEGLVKMGVSPVMVTGDNWRTARAVAKELGITDVRAEVMPAGKAEVIHNFQKDGSTVAMVGDGINDSPALAASDIGIAIGAGTDIAIEAADFVLMRNNLEDVITAIDLSRKTFNRIRLNYVFAMAYNVIAIPVAAGVLFPSLGIKLPPWAAGACMALSSVSVVCSSLLLRRYKRPRLTTILKITVE 1010
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10644182 10650513 - CmoCh03G014860.1 Cmo03g01486 378949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo03g01486 1010 TIGRFAM TIGR00003: copper ion binding protein 145 207 IPR006122 GO:0005507
Cmo03g01486 1010 TIGRFAM TIGR00003: copper ion binding protein 60 125 IPR006122 GO:0005507
Cmo03g01486 1010 CDD HMA 61 126 IPR006121 GO:0046872
Cmo03g01486 1010 Gene3D - 144 209 - -
Cmo03g01486 1010 Gene3D - 57 130 - -
Cmo03g01486 1010 SFLD p-type atpase 647 936 IPR044492 -
Cmo03g01486 1010 CDD HMA 145 208 IPR006121 GO:0046872
Cmo03g01486 1010 SUPERFAMILY Calcium ATPase, transmembrane domain M 402 972 IPR023298 -
Cmo03g01486 1010 SUPERFAMILY HAD-like 664 990 IPR036412 -
Cmo03g01486 1010 ProSitePatterns E1-E2 ATPases phosphorylation site. 667 673 IPR018303 -
Cmo03g01486 1010 CDD P-type_ATPase_Cu-like 306 980 - -
Cmo03g01486 1010 PRINTS H+-transporting ATPase (proton pump) signature 884 900 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo03g01486 1010 PRINTS H+-transporting ATPase (proton pump) signature 856 872 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo03g01486 1010 PRINTS H+-transporting ATPase (proton pump) signature 915 940 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo03g01486 1010 ProSitePatterns Heavy-metal-associated domain. 64 94 IPR017969 GO:0046872
Cmo03g01486 1010 ProSitePatterns Heavy-metal-associated domain. 148 177 IPR017969 GO:0046872
Cmo03g01486 1010 Pfam Heavy-metal-associated domain 62 124 IPR006121 GO:0046872
Cmo03g01486 1010 Pfam Heavy-metal-associated domain 146 206 IPR006121 GO:0046872
Cmo03g01486 1010 SUPERFAMILY Calcium ATPase, transduction domain A 465 551 IPR008250 -
Cmo03g01486 1010 ProSiteProfiles Heavy-metal-associated domain profile. 143 209 IPR006121 GO:0046872
Cmo03g01486 1010 PANTHER HEAVY METAL P-TYPE ATPASE 24 1003 - -
Cmo03g01486 1010 Gene3D - 632 941 IPR023214 -
Cmo03g01486 1010 SUPERFAMILY HMA, heavy metal-associated domain 56 129 IPR036163 GO:0046872
Cmo03g01486 1010 Pfam E1-E2 ATPase 446 643 - -
Cmo03g01486 1010 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 418 966 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cmo03g01486 1010 Gene3D - 433 555 - -
Cmo03g01486 1010 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 379 993 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cmo03g01486 1010 Gene3D - 672 763 IPR023299 GO:0000166
Cmo03g01486 1010 Gene3D - 764 815 IPR023299 GO:0000166
Cmo03g01486 1010 SFLD Haloacid Dehalogenase 647 936 - -
Cmo03g01486 1010 PANTHER ATP7, ISOFORM B 24 1003 - -
Cmo03g01486 1010 Pfam haloacid dehalogenase-like hydrolase 661 898 - -
Cmo03g01486 1010 ProSiteProfiles Heavy-metal-associated domain profile. 59 127 IPR006121 GO:0046872
Cmo03g01486 1010 PRINTS P-type cation-transporting ATPase superfamily signature 809 820 - -
Cmo03g01486 1010 PRINTS P-type cation-transporting ATPase superfamily signature 501 515 - -
Cmo03g01486 1010 PRINTS P-type cation-transporting ATPase superfamily signature 665 679 - -
Cmo03g01486 1010 PRINTS P-type cation-transporting ATPase superfamily signature 831 841 - -
Cmo03g01486 1010 PRINTS P-type cation-transporting ATPase superfamily signature 884 903 - -
Cmo03g01486 1010 PRINTS P-type cation-transporting ATPase superfamily signature 907 919 - -
Cmo03g01486 1010 SUPERFAMILY HMA, heavy metal-associated domain 143 213 IPR036163 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01486 Cmo-Chr3:10644182 Cmo07g01190 Cmo-Chr7:6446516 1.33E-12 dispersed
Cmo05g00742 Cmo-Chr5:3902126 Cmo03g01486 Cmo-Chr3:10644182 7.61E-69 dispersed
Cmo03g01486 Cmo-Chr3:10644182 Cmo07g00032 Cmo-Chr7:204486 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo03g01486 K17686 - csv:101205642 1791.93