Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00003 ATGGGTCTTCATAGCTTCTTCTTAATCCTTCTTCCCGTCTCTTTCTTCTTCCAATTCCGCCTCTCCCTTTCCCAGAACCCCACAATTTGCCATTCCGACGACTTCAAGGCCTTGCAGGACTTCCACAGCGCGTTTGATTCCCAAATCGACGGATGGCACACCGGCTGTTCGACGAATTGCTGCAGTTGTATTGGCCTCACTTGTGACTCTTCTGGACGGGTTGTGAAGATGGAGCTTGGTGGTAGGAAGATCAAGGGTCAGTTACCTTACTCGATTGCAAGATTGGAACACCTCAGAGTTCTCAATCTGTCTTCTAATTCTCTCAATGGGTCCGTTCCCTTGGCTCTGTTTCATCTACCATACTTGGAAGTTCTTGATCTCAGTTTCAACGATTTGGTTGGGAGCATCTCATCAGGTACCATTAATTTGCCTTCCATCCGGCTTCTTAACGTTTCTCATAATAACTTTAATGGAAGTCTTCCACTTGGGGTTTGTGTTAACTCCTCTAGAATTGAGATTCTGAATCTGGGTTTCAATCATTTCACTGGTATGTTTCCTGTTGAGCTTGCTGAATGTGTTTCCTTGAAGAGACTGTTTGTGGAATCGAATTTACTCAGTGGTGGGATACCTGATGAGGCTTCTGGATTGAGGAAATTGACACATTTTTGTGTTCAGAATAACAAGCTTTCTGGTTCTTTGAATGGTGGTGTTGGGAATCTCACAAACCTTGTTCGATTTGATTTGTCATCTAATGGGTTTTTCGGCGAAATTCCGGATGTTTTTTATAACTCTGTGAATTTGAGTTATTTTGCTACCGAATCTAATAGGTTTAGCGGAAAGATTCCCAGTTCTTTGTCAAACTCTGCTTCACTCACTGTCCTAAATTTGAGGAACAATTCAATACAGGGAACTCTTGATCTCAACTGTTCAGCAATGAAAAGCCTGGTTACACTTGATTTAGGCACTAATAGGTTTCATGGCTCTATACCAAGTAATCTTCCCTCTTGTACTCAACTGAGAAGTATAAACCTTGCTAGGAACAACCTTGGCGGTCAGATCCCCGAAAGCTTTAGGAATTTTCAGAGCCTCTCGTATTTATCACTTACGAATACGAGCATTGTTAATGTTTCGTCTGCTCTTAACATCTTGCAACATTGCAAGAATTTGAGTACAATGGTCCTTACCTTTAATTTTCGTGGTGAAGTGTTGGAAGATGATCCTAACTTGCATTTCAAGAGCCTCCAAGTTTTTATAATTGCTAATTGTGGATTGAAGGGAATCATACCCCAGTGGTTGAGAGGTTCTAGGAAGCTGCAGTTGTTGGATTTGTCGTGGAACCGTCTTGGAGGAACTATTCCACCCTGGTTCAGCGAGTTGCAGTCCTTGTTTTACTTGGATTTATCTAATAATTCATTCACTGGATATATCCCTACAGAGATGACTAAAATGAGGAGTTTCATTGACAGAAAATTCTCGCCCGATGAACCTTCCTCACTAGATTTTTCCCTTTTTGTGACAAGAAATGGAACTGGATTGCAGTACAATCAAGTATGGAGGTTTCCACCCACTTTGAATCTCAGTCTCAACAATCTCAGTGGGCCAATCTCGCCAGAGTTTGGAAATCTTAAGGAGATTCTAGTTCTTGATCTGAAAATCAACAGCCTTTCGGGATCGATTCCGAGCAGCCTTTCGGGGATGGTTAGCTTAGAGACTTTGGATCTTTCTCACAACAATCTTTCAGGAATAATTCCTCCTCCACTGCAAAATCTCAATTTTTTGTCTAAGTTCAGTGTTGCATACAATCATTTACATGGGGCAATTCCTGAAGGAGGTCAGTTTCATAGCTTTGATAACTCTAGCTTTGAAGGAAACAATTTTTGTGTCCGAGACAGTATATGTACGTCAATTGATCCTCTCGTGCCATCCCACAAATCAAGAATGGATATAGGGAGTATTGTAGGTATTGTTATCGGTATTGTGTTCGGGATCATGTTTCTTATAACTCTTATGGTTGTGTTTATGCTTCGGGCTCCTCGGGGAAGAGTTGGGGATCCCGAAAATGAAGTGTCTAATACTGACGATAAAGACTTGGAGGAAGGCAGGTCAGGATTGGTAGTTCTGTTCCAAAACAATAACAATGGAAGCCTCTCGCTGGAGGACATTTTGAAATGGACAAATGATTTTGATCAAGAAAATATCATAGGATGTGGGGGTTTTGGTTTAGTTTACAAAGCAACCCTTCCCGACGGCAGAAAGGTTGCCATAAAACGGCTATCTGGTGATTGTGGTCAAATGGACAGAGAATTTCGGGCGGAAATCGAAACGCTTTCTGGTGCTCGGCATCAGAATCTTGTTCTTCTTCTAGGGTATTGTTTGTATAAAAATGACAGGCTTCTGATTTACTCTTTCATGGAGAATGGTAGCTTAGATTACTGGCTACATGAAAAACTTGATGGTCCGTCTTGCCTCAATTGGGATACCAGACTGCAGATTGCTCGGGGGGCAGCTGCAGGGCTGGCTTATTTGCATCAATCCTGTGAACCTCATATCCTCCATCGAGATATAAAGTCGAGTAACATTCTTTTAGACAAAAACTTCAAAGCTCACTTAGCCGATTTTGGTCTTGCCAGGCTCATTCTTCCCTATGATTCCCACGTCACGACCGATCTTGTTGGTACACTGGGCTACATTCCACCAGAGTACGGGCAATCCTCGGTGGCAACTTACAAAGGGGACGTGTATAGTTTTGGAGTTGTTCTATTAGAGCTTTTGACTGGTAAAAGACCAATCGATATGTGCAGACCGAAAGGAGTTCGAGACTTGATCTCTTGGGTGTTTCAAATAAGGGAAGACAGAAAAGTAAGTGAGGTGTTCGATCCGTTAATATACAATAAGCAGCATGAGACAGCGATGTCTGAAGTTCTTGATATAGCATGCCTTTGCTTATGCAAGGTACCTAAAGAGAGGCCTTCAACTCAACAGCTGGTTTCTTGGCTTGATAAAGTAGGTTAA 3012 42.16 MGLHSFFLILLPVSFFFQFRLSLSQNPTICHSDDFKALQDFHSAFDSQIDGWHTGCSTNCCSCIGLTCDSSGRVVKMELGGRKIKGQLPYSIARLEHLRVLNLSSNSLNGSVPLALFHLPYLEVLDLSFNDLVGSISSGTINLPSIRLLNVSHNNFNGSLPLGVCVNSSRIEILNLGFNHFTGMFPVELAECVSLKRLFVESNLLSGGIPDEASGLRKLTHFCVQNNKLSGSLNGGVGNLTNLVRFDLSSNGFFGEIPDVFYNSVNLSYFATESNRFSGKIPSSLSNSASLTVLNLRNNSIQGTLDLNCSAMKSLVTLDLGTNRFHGSIPSNLPSCTQLRSINLARNNLGGQIPESFRNFQSLSYLSLTNTSIVNVSSALNILQHCKNLSTMVLTFNFRGEVLEDDPNLHFKSLQVFIIANCGLKGIIPQWLRGSRKLQLLDLSWNRLGGTIPPWFSELQSLFYLDLSNNSFTGYIPTEMTKMRSFIDRKFSPDEPSSLDFSLFVTRNGTGLQYNQVWRFPPTLNLSLNNLSGPISPEFGNLKEILVLDLKINSLSGSIPSSLSGMVSLETLDLSHNNLSGIIPPPLQNLNFLSKFSVAYNHLHGAIPEGGQFHSFDNSSFEGNNFCVRDSICTSIDPLVPSHKSRMDIGSIVGIVIGIVFGIMFLITLMVVFMLRAPRGRVGDPENEVSNTDDKDLEEGRSGLVVLFQNNNNGSLSLEDILKWTNDFDQENIIGCGGFGLVYKATLPDGRKVAIKRLSGDCGQMDREFRAEIETLSGARHQNLVLLLGYCLYKNDRLLIYSFMENGSLDYWLHEKLDGPSCLNWDTRLQIARGAAAGLAYLHQSCEPHILHRDIKSSNILLDKNFKAHLADFGLARLILPYDSHVTTDLVGTLGYIPPEYGQSSVATYKGDVYSFGVVLLELLTGKRPIDMCRPKGVRDLISWVFQIREDRKVSEVFDPLIYNKQHETAMSEVLDIACLCLCKVPKERPSTQQLVSWLDKVG 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10055 13066 + CmoCh04G000030.1 Cmo04g00003 378978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00003 1003 SUPERFAMILY L domain-like 30 232 - -
Cmo04g00003 1003 ProSiteProfiles Leucine-rich repeat profile. 568 591 IPR001611 GO:0005515
Cmo04g00003 1003 PANTHER RECEPTOR-LIKE PROTEIN 55 99 162 - -
Cmo04g00003 1003 PRINTS Leucine-rich repeat signature 566 579 - -
Cmo04g00003 1003 PRINTS Leucine-rich repeat signature 438 451 - -
Cmo04g00003 1003 PANTHER OSJNBB0004A17.8 PROTEIN 167 1002 - -
Cmo04g00003 1003 PANTHER OSJNBB0004A17.8 PROTEIN 5 92 - -
Cmo04g00003 1003 PANTHER OSJNBB0004A17.8 PROTEIN 99 162 - -
Cmo04g00003 1003 SMART LRR_typ_2 240 263 IPR003591 -
Cmo04g00003 1003 SMART LRR_typ_2 566 589 IPR003591 -
Cmo04g00003 1003 SMART LRR_typ_2 95 119 IPR003591 -
Cmo04g00003 1003 SMART LRR_typ_2 459 483 IPR003591 -
Cmo04g00003 1003 SMART LRR_typ_2 312 336 IPR003591 -
Cmo04g00003 1003 SMART LRR_typ_2 143 167 IPR003591 -
Cmo04g00003 1003 Gene3D Transferase(Phosphotransferase) domain 1 804 1002 - -
Cmo04g00003 1003 ProSitePatterns Protein kinases ATP-binding region signature. 734 756 IPR017441 GO:0005524
Cmo04g00003 1003 SMART serkin_6 728 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00003 1003 Gene3D Ribonuclease Inhibitor 309 634 IPR032675 -
Cmo04g00003 1003 SUPERFAMILY L domain-like 512 628 - -
Cmo04g00003 1003 Pfam Protein kinase domain 729 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00003 1003 Gene3D Ribonuclease Inhibitor 31 308 IPR032675 -
Cmo04g00003 1003 SUPERFAMILY RNI-like 168 483 - -
Cmo04g00003 1003 Pfam Leucine rich repeat 91 132 IPR001611 GO:0005515
Cmo04g00003 1003 Gene3D Phosphorylase Kinase; domain 1 689 803 - -
Cmo04g00003 1003 ProSiteProfiles Protein kinase domain profile. 728 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00003 1003 Pfam Leucine Rich Repeat 338 360 IPR001611 GO:0005515
Cmo04g00003 1003 Pfam Leucine Rich Repeat 437 459 IPR001611 GO:0005515
Cmo04g00003 1003 Pfam Leucine Rich Repeat 568 590 IPR001611 GO:0005515
Cmo04g00003 1003 SUPERFAMILY Protein kinase-like (PK-like) 711 999 IPR011009 -
Cmo04g00003 1003 PANTHER RECEPTOR-LIKE PROTEIN 55 167 1002 - -
Cmo04g00003 1003 PANTHER RECEPTOR-LIKE PROTEIN 55 5 92 - -
Cmo04g00003 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 850 862 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00003 Cmo-Chr4:10055 Cmo16g00436 Cmo-Chr16:2077034 0 dispersed
Cmo15g00590 Cmo-Chr15:2844691 Cmo04g00003 Cmo-Chr4:10055 2.59E-74 dispersed
Cmo04g00003 Cmo-Chr4:10055 Cmo18g01258 Cmo-Chr18:12320265 6.31E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74220 PF00069 Pkinase 9.90E-45 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00003 - - bhj:120069286 1598.18