Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00010 ATGTCACGGAAGGGTTTGATGGAACAGGACTTAAAGAAATTGGATGTGACAAAACTCCATCCACTATCACCAGAAGTTATATCTCGTCAAGCTACCATTAATATTGGTACAATTGGTCATGTGGCACATGGGAAATCTACTGTTGTAAAAGCAATTTCAGGAGTCCAGACAGTACGTTTTAAGAATGAGTTGGAGCGTAACATTACCATTAAGCTGGGATATGCTAATGCAAAGATATACAAATGTGAAGATGACAAGTGCCCTCGTCCAATGTGCTACAAGGCGTATGGAAGTGGAAAGGAAGACAGTCCTGTATGTGATGTGCCTGGGTTTGAAAATTGCAGGATGAAACTATTGCGACACGTATCCTTTGTTGACTGCCCGGGTCACGATATTCTTATGGCTACCATGCTTAATGGAGCAGCCATTATGGATGGAGCATTACTTCTGATAGCAGCAAATGAAAGCTGCCCTCAACCTCAAACCTCTGAGCACCTTGCTGCTGTTGAAATTATGCGCCTTCAACATATTATAATCCTCCAGAATAAAGTTGATCTTATTCAAGAAAATGTAGCAATCAATCAACATGAAGCAATTCAAAAATTTATTCAAGGAACTGTTGCCGATGGTGCACCAGTAGTACCAATTTCTGCTCAGCTGAAGTACAATATTGATGTTGTTTGCGAGTATATAGTGAAAAAGATTCCAATTCCTGAAAGGAATTTTGTCTCTCCGCCTAATATGATTGTGATTCGATCTTTTGATGTTAACAAACCTGGATTTGAAGTTGACGAGATCAAAGGTGGTGTGGCTGGTGGTAGCATATTACGGGGTGTTTTAAAGGTGAATCAATTTATTGAAGTTCGTCCGGGGATTGTGGTTAAGGATGAAAGTGGTAACATCAAGTGCACCCCAATATACTCGAGGATTGTTTCTTTGTATGCCGAGCAAAATGAGCTGCAATTTGCAGTCCCTGGAGGTCTTATTGGAGTTGGCACAACCATGGATCCCACTTTGACTCGTGCTGACAGATTGGTCGGTCAGGTTCTTGGAGAAGTCGGATCACTTCCTGATGTTTTTGTTGAGCTAGAGGTGAACTTTTTCCTTCTGCGGCGGCTCCTAGGTGTCAGGACGAAAGGATCAGAAAGGCAGGGAAAAGTATCAAAATTGGCTAAGGGAGAGATTCTAATGTTGAACATAGGATCCATGTCTACAGGAGCTAGAGTACTTGCAGTTAAGAATGATTTAGCAAAGTTGCAGCTTACCTCTCCTGTTTGCACCAGCAAGGGGGAGAAGATTGCTCTAAGTCGTCGAGTCGAGAAGCACTGGCGTCTTATTGGCTGGGGTCAAATTCAAGCTGGAACGACCCTTGACGTTCCCCCTTGCCCCATTTGA 1395 42.8 MSRKGLMEQDLKKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDKCPRPMCYKAYGSGKEDSPVCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAIQKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFVSPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIKCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPDVFVELEVNFFLLRRLLGVRTKGSERQGKVSKLAKGEILMLNIGSMSTGARVLAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGTTLDVPPCPI 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 51618 56064 + CmoCh04G000100.1 Cmo04g00010 378985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00010 464 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 30 239 IPR000795 GO:0003924|GO:0005525
Cmo04g00010 464 CDD eIF2_gamma_II 241 354 IPR044127 GO:0000049
Cmo04g00010 464 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 355 452 IPR009001 -
Cmo04g00010 464 Gene3D Translation factors 357 456 - -
Cmo04g00010 464 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 1 463 - -
Cmo04g00010 464 Gene3D - 30 240 IPR027417 -
Cmo04g00010 464 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 242 IPR027417 -
Cmo04g00010 464 Gene3D Translation factors 242 356 - -
Cmo04g00010 464 PRINTS GTP-binding elongation factor signature 34 47 IPR000795 GO:0003924|GO:0005525
Cmo04g00010 464 PRINTS GTP-binding elongation factor signature 123 133 IPR000795 GO:0003924|GO:0005525
Cmo04g00010 464 PRINTS GTP-binding elongation factor signature 139 150 IPR000795 GO:0003924|GO:0005525
Cmo04g00010 464 PRINTS GTP-binding elongation factor signature 177 186 IPR000795 GO:0003924|GO:0005525
Cmo04g00010 464 CDD eIF2_gamma 33 240 IPR044128 GO:0005525
Cmo04g00010 464 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 1 463 - -
Cmo04g00010 464 Pfam Initiation factor eIF2 gamma, C terminal 362 451 IPR015256 -
Cmo04g00010 464 Pfam Elongation factor Tu domain 2 268 350 IPR004161 GO:0005525
Cmo04g00010 464 CDD eIF2_gamma_III 357 451 IPR015256 -
Cmo04g00010 464 SUPERFAMILY Translation proteins 240 354 IPR009000 -
Cmo04g00010 464 Pfam Elongation factor Tu GTP binding domain 32 236 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00010 Cmo-Chr4:51618 Cmo17g01132 Cmo-Chr17:9225831 1.92E-15 dispersed
Cmo04g00010 Cmo-Chr4:51618 Cmo04g01051 Cmo-Chr4:5256330 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00010 K03242 - csv:101220434 909.057