Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00017 ATGCCTATCTATGCACTCCTCCTTCCTATTTTCTATGAGGTTGCTGAGAGTGGGGGAGACAAAGGAGGAAGAGGAATGGTAGAAAAGACAAGTGCTGGGATGAGTATGAAGATGCAGCAGAGCCACCACTCAGTGGCTGTGAGGTATAATGAGCAAATTGGAAGCAAAAAAGGGGTCACCTTCATTCAAGCCAACAGGGCTTGGCTTCCCAAGTTCTTGTTGCTTTGGGTTCTGTTGGTGGCATTCATTAGTATGCTGATCTACAAGGGAATGGAGGCTGACAACAAGGTTAGAAGAAGGGAAGTCTTGGGGAGCATGTGTGACCAGAGGGCAAGGATGCTTCAGGATCAATTCAGTGTCAGTGTCAACCATGTCCATGCTTTGGCTATTCTCATTTCCACTTTCCACTACTTCAAGAACATATCAGCAATCGATCAGGAAACTTTTGCTGAGTACACAGCCAGAACTGCTTTCGAGCGGCCTTTGCTCAGTGGTGTGGCATTTGCGCAAAGAGTGGTGCACTCGGAGCGAGAGAAATTCGAGATGCAACATGGTTGGACTATAAAAACGATGGAAAGGGAAGCATCGCCTATAAGGGATGAGTATGCGCCAGTCATATTTTCCCAGGAAACTGTTTCCTACATTGAATCTCTTGATATGATGTCTGGAGAGGAGGACCGTGAAAACATTTTGAGATCAAGAGAAACAGGTAAAGCTGTTTTAACGAGCCCTTTCAGACTACTGGGTTCTCACCATCTTGGAGTTGTGCTGACGATCCCTGTTTATAAAACCAAGCTTCCGGCAAATCCAACTATGGATGAGCGAACTCGAGCAACAGCAGGTTACCTTGGTGGAGCATTTGATGTGGAATCACTTGTCGAAAATTTGCTTGGGCAACTTGCTGGAAATCAGGCTATTTTGGTGAATGTATACGATATCACGAACTATTCTGATCCCCTAGTAATGTATGGTCATCAATATGAAGACGGAGACATGTCTCTTTTGCACGAAAGCAAATTAGATTTTGGAGATCCATTTAGGAAGCATGAGATGATATGCAGATATCATCAGAAAGCACCAACATTATGGACGGCACTTACTACTGCATTCTTATTCTTTGTGATTGGATTGTTAGTGGGATATATATTATACGGTGCAGCAACTCATATCGTTAAAGTCGAGGACGATTTCCATGAAATGCAAGAATTGAAAGTTCTAGCTGAAGCTGCTGATGTTGCAAAATCTCAGTTTCTTGCCACCGTCTCTCATGAAATCAGGACACCCATGAATGGCATCCTTGGAATGCTTGCTCTACTTCTAGATACGGAATTGAGTTCAACTCAAAGGGATTACGCTCAAACTGCCAAGGCCTGTGGAAAAGCACTGATAGCGCTAATAAATGAAGTGCTTGACCGGGCGAAAATTGAAGCTGGGAAGTTGGAGCTTGAGGCGGTTCCTTTTGACCTTAGATTGATACTAGATGATGTTCTGTCTTTGTTTTCTGAAAAGTCACGGCACAAGGGAGTAGAGTTGGCAGTGTTTGTTTCTGACAGAGTTCCTGAAATCGTTATGGGGGATCCTGGAAGGTTCAGACAAGTAATCACAAATCTTGTGGGCAACTCTGTAAAATTCACAGAACAAGGACATATATTCGTCAAAGTCCAATTAGCCGAACAATCAATGGCTTCTACGAATATCAAATCTGAAACTCATGTGAACGGAAACTTAGATGATGGTGCATCCTACAATAAGCATCAGTTTCAAACCTTAAGTGGATGTGAGGCCGCTGATAACCAAAACAGTTGGGATACTTTCAAGCATCTCATTGCAAATGACGAACGACCAAACACTTCAAGCAATTTTACGGTTACGAATGAAAGCTCTGATATTGTTACTGTTATGATATCGGTGGAAGATACAGGAATCGGGATTCCCTTATGTGCCCAAGGTCGAGTCTTTACGCCCTTCATGCAAGCAGATAGCTCAACCTCTAGAAACTATGGTGGAACTGGTATTGGCTTAAGCATCAGTAAGTGTCTGGTAGAACTAATGGGCGGTCAGATAACCTTTGTAAGCCGTCCCGAGGTTGGAAGCACCTTCTCATTCACTGCTGTGTTTGGAAAATGTGAGAAGAAAGCGACAGTCGACATTAAAAAGCCTAATTTGGAGGAACTCCCTTCTGCATTTAGAGGACTGAAATCTGTCGTAATTGATGGGAAACCAGTTAGAGCTGCTGTGACCAAATACCATTTGAAGAGACTTGGCATCCTGGTGGAAGTTGCCAGTAGTGTCAAGATGGCTGCAGCTTTATGGGGAAAAAATGGCTCTGTTAGATCAAGTAATATCTTTCAGCCGGACGTAATTTTTCTTGAGAAAGATATCTTTTTTTCAAGTGAGGAACGTGGTTCTTCTAATCTACCTCATCGACTGGACTGGAAGCAGAATGGTCATGCCTTTAAGTTGCCGAAATTAATCCTTCTCGCGACCAGCATAAGCACGGATGAATTTGATAAAGCGAAGGAAGCAGGTTTTTCAGACACCTTGGTCATGAAACCACTAAGAGCAAGCATGATAGGTGCATGTCTTCAACAGGTGCTTGGCTCGGGAAAGAAACGGCAGCTTGGAAAGGGCACGGCAAATGGGTCCAACTTTCTTAGAGGTAAGAAAATATTGGTTGTTGATGACAATATGGTGAACCGAAGAGTCGCTGCAGGTGCCTTGAAGAAATTTGGTGCCGATGTAGAGTGTGCTGAGAGTGGAAAAGCTGCTCTGACATTGCTTCAACTTCCACACAGTTTTGACGCTTGCTTTATGGATATTCAGATGCCAGAAATGGATGGATTCGAAGTGACCCGAAGAATCAGGCTGATGGAGAGCAAGGCAAAGGAAGCAGTGGTTAGAGAATCTGGTGGGAAAGAAAATGCAAGGAAAGATGAGTGGCATGTTCCAATATTAGCCATGACCGCGGACGTTATTCACGCAACGTGCGACAAGTGCCAGGCAAGTGGGATGGATGGATACGTATCAAAACCATTCGAGGAAGAGAATCTGTACCAGGCAGTTTCCAAGTGTTTCGATTTAAAGGCCATCACGGATTCTTGA 3102 43.91 MPIYALLLPIFYEVAESGGDKGGRGMVEKTSAGMSMKMQQSHHSVAVRYNEQIGSKKGVTFIQANRAWLPKFLLLWVLLVAFISMLIYKGMEADNKVRRREVLGSMCDQRARMLQDQFSVSVNHVHALAILISTFHYFKNISAIDQETFAEYTARTAFERPLLSGVAFAQRVVHSEREKFEMQHGWTIKTMEREASPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRSRETGKAVLTSPFRLLGSHHLGVVLTIPVYKTKLPANPTMDERTRATAGYLGGAFDVESLVENLLGQLAGNQAILVNVYDITNYSDPLVMYGHQYEDGDMSLLHESKLDFGDPFRKHEMICRYHQKAPTLWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMQELKVLAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTELSSTQRDYAQTAKACGKALIALINEVLDRAKIEAGKLELEAVPFDLRLILDDVLSLFSEKSRHKGVELAVFVSDRVPEIVMGDPGRFRQVITNLVGNSVKFTEQGHIFVKVQLAEQSMASTNIKSETHVNGNLDDGASYNKHQFQTLSGCEAADNQNSWDTFKHLIANDERPNTSSNFTVTNESSDIVTVMISVEDTGIGIPLCAQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQITFVSRPEVGSTFSFTAVFGKCEKKATVDIKKPNLEELPSAFRGLKSVVIDGKPVRAAVTKYHLKRLGILVEVASSVKMAAALWGKNGSVRSSNIFQPDVIFLEKDIFFSSEERGSSNLPHRLDWKQNGHAFKLPKLILLATSISTDEFDKAKEAGFSDTLVMKPLRASMIGACLQQVLGSGKKRQLGKGTANGSNFLRGKKILVVDDNMVNRRVAAGALKKFGADVECAESGKAALTLLQLPHSFDACFMDIQMPEMDGFEVTRRIRLMESKAKEAVVRESGGKENARKDEWHVPILAMTADVIHATCDKCQASGMDGYVSKPFEEENLYQAVSKCFDLKAITDS 1033
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 90156 96153 + CmoCh04G000170.1 Cmo04g00017 378992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00017 1033 Coils Coil 463 483 - -
Cmo04g00017 1033 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 403 479 IPR036097 GO:0000155|GO:0007165
Cmo04g00017 1033 Pfam His Kinase A (phospho-acceptor) domain 413 478 IPR003661 GO:0000155|GO:0007165
Cmo04g00017 1033 CDD REC_hyHK_CKI1_RcsC-like 890 1021 - -
Cmo04g00017 1033 PRINTS Bacterial sensor protein C-terminal signature 633 647 IPR004358 GO:0016310|GO:0016772
Cmo04g00017 1033 PRINTS Bacterial sensor protein C-terminal signature 651 661 IPR004358 GO:0016310|GO:0016772
Cmo04g00017 1033 PRINTS Bacterial sensor protein C-terminal signature 668 686 IPR004358 GO:0016310|GO:0016772
Cmo04g00017 1033 PRINTS Bacterial sensor protein C-terminal signature 692 705 IPR004358 GO:0016310|GO:0016772
Cmo04g00017 1033 SMART HKATPase_4 525 708 IPR003594 -
Cmo04g00017 1033 SUPERFAMILY CheY-like 730 867 IPR011006 -
Cmo04g00017 1033 SMART HisKA_10 413 478 IPR003661 GO:0000155|GO:0007165
Cmo04g00017 1033 ProSiteProfiles Response regulatory domain profile. 889 1025 IPR001789 GO:0000160
Cmo04g00017 1033 Gene3D - 477 711 IPR036890 -
Cmo04g00017 1033 SMART CHASE_2 140 325 IPR006189 -
Cmo04g00017 1033 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 467 703 IPR036890 -
Cmo04g00017 1033 CDD HisKA 413 474 IPR003661 GO:0000155|GO:0007165
Cmo04g00017 1033 Gene3D CHASE domain 144 359 IPR042240 -
Cmo04g00017 1033 Gene3D - 91 143 - -
Cmo04g00017 1033 PANTHER HISTIDINE KINASE 4 54 1027 - -
Cmo04g00017 1033 PANTHER TWO-COMPONENT HISTIDINE KINASE 54 1027 - -
Cmo04g00017 1033 SUPERFAMILY CheY-like 885 1026 IPR011006 -
Cmo04g00017 1033 SMART REC_2 888 1021 IPR001789 GO:0000160
Cmo04g00017 1033 Pfam CHASE domain 143 323 IPR006189 -
Cmo04g00017 1033 ProSiteProfiles CHASE domain profile. 140 352 IPR006189 -
Cmo04g00017 1033 CDD HATPase_EvgS-ArcB-TorS-like 530 706 - -
Cmo04g00017 1033 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 525 705 IPR003594 -
Cmo04g00017 1033 Gene3D - 883 1031 - -
Cmo04g00017 1033 ProSiteProfiles Histidine kinase domain profile. 420 708 IPR005467 -
Cmo04g00017 1033 Gene3D - 386 476 - -
Cmo04g00017 1033 ProSiteProfiles Response regulatory domain profile. 733 866 IPR001789 GO:0000160
Cmo04g00017 1033 Pfam Response regulator receiver domain 890 1021 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01734 Cmo-Chr1:12959460 Cmo04g00017 Cmo-Chr4:90156 1.02E-52 dispersed
Cmo04g00017 Cmo-Chr4:90156 Cmo15g00925 Cmo-Chr15:4707929 0 dispersed
Cmo04g00017 Cmo-Chr4:90156 Cmo04g02235 Cmo-Chr4:16716157 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9496 PF02518 HATPase_c 8.10E-32 CL0025 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00017 K14489 - csv:101204531 1768.44