Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00027 ATGAGCAAGTCCAAAATGGGCGACCCCGACAACAGTAATAATAATAGCAATAGCAATAGCAATAGCAATAGCAATGCCAGGAGTGGTCCGGCGGCGGAGCACTGTGTGGACATAGTTCATACCGTGGTTCCCCCTCCGCACAGAAGCGGGTTGCAGAGGCTAGGCAACCGGCTGAAGGAGACGTTTTTCCCCGATGACCCTCTTCGGCAGTTCAAAGGGCAGTCTCCGGCGAGGAAATGGGTGATCGGAGCTCAGTATATTTTCCCGATTCTTGAATGGGGGCCTCATTATAATCTCAGGCTCTTCAAATCTGATGTTGTTGCTGGGCTCACCATTGCAAGCTTGGCCATCCCTCAGGGTATTAGCTATGCTAAGCTTGCTAATCTGCCTCCCATTGTTGGGCTTTATTCAAGCTTTGTTCCACCACTGGTGTATGCGGTTCTTGGAAGCTCAAGAGACCTGGCGGTTGGGCCTGTATCAATAGCATCGCTAATACTGGGATCCATGCTGAGGCAAGAAGTGTCCCCCCTCAAAGATCCCATTCTCTTTCTCCAACTCGCCTTCACCTCCACCTTCTTCGCCGGCCTCTTCCAGGCCTCCCTCGGCTTCCTAAGACTTGGGCTCATAATCGATTTTCTGTCGAAGGCGACTTTGATTGGGTTCATGGCGGGGGCGGCCATTATTGTGTCTCTGCAGCAGCTTAAAGGCTTGCTTGGAATTACCCATTTCACCAAACAGATGGGTTTGCTTCCTGTTTTGACCTCAGTTTTTCATCACACTCACGAGTGGTCGTGGCAGACTATACTGATGGGCTTTTGTTTCCTTCTCTTCCTTCTAATCACAAGACACATCAGCATAAGAAAGCCGAAGCTGTTCTGGATATCAGCCGGAGCTCCTCTAGCGTCTGTCATTCTTTCAACCATATTGGTGTTTGCACTCAAGGCCGATGGTCATGGCATCAGCACAATTGGGAAATTGCAACAAGGCTTGAACCCACCTTCATGGAACATGCTCCGTTTCCAACACTCCCATCTCCCCCTTGTTATTAAGACTGGCCTCGTCACCGGCATCATCTCGCTCACGGAAGGAATAGCCGTGGGTCGGACATTTGCAGCTATAAAAGACTACCGCGTCGACGGCAACAAGGAAATGATCGCCATCGGCCTCATGAACGTCCTCGGCTCTTTCACTTCTTGCTATGTCACCACAGGCGCCTTCTCCAGGTCCGCGGTGAACCATAACGCGGGGGCCAAAACCGCCGTGTCTAACATCATAATGTCCGTCACAATAATGGTCACGCTCCTGTTTCTGATGCCTCTGTTTCAGTACACGCCCAATCTGGTGCTGGCCGCCATTATCGTCACCGCCGTTATTGGGCTTATCGACGTCCCCGCCGCCTACGCCATTTGGAAGGTGGATAAGTTCGACTTTGTTGTCATGCTCTGTGCCTTCTTCGGCGTCATTCTCATCTCTGTTCAACACGGTCTCGCCATTGCTGTTGGCATATCCATTTTCAAAATCATCCTGCAAATCACAAGGCCAAAAACAGTGATGTTGGGGAACATACCTGGAACAGACATATACAGAAACCTCGACCATTACAAGGATGCAATGGGCGTCCGAGGTTTCCTCATCTTGGGCATCGAAGCTCCAGTCAACTTTGCCAACGCTACATATCTCAACGAAAGGATTTTGAGATGGATAGAAGAGTATGAAGCTGAGGATGACGTGAAGAAGGAGGGCGGTGGCCTGCAGTTTGTTGTTTTAGAATTGTCAGCCGTGAGTGGCATAGACACCAGTGGAGTCCTGCTCTTCAAGGATCTAAGAAGAGCATTGGAAAAGAAGGATGTCGAGCTTGTGTTGGTGAATCCATTGGGTGAAGTGTTGGAAAAGTTGCAAAAAGCAGATGAAAATGGAGAGATTTTGAGGCCAAATAATGTGTACTTGACAGTGGGAGAGGCGGTTGCTTCGCTATCAGCAACAGTGAAGGGACAATGCTCAACTACGATATAG 2013 49.73 MSKSKMGDPDNSNNNSNSNSNSNSNARSGPAAEHCVDIVHTVVPPPHRSGLQRLGNRLKETFFPDDPLRQFKGQSPARKWVIGAQYIFPILEWGPHYNLRLFKSDVVAGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYAVLGSSRDLAVGPVSIASLILGSMLRQEVSPLKDPILFLQLAFTSTFFAGLFQASLGFLRLGLIIDFLSKATLIGFMAGAAIIVSLQQLKGLLGITHFTKQMGLLPVLTSVFHHTHEWSWQTILMGFCFLLFLLITRHISIRKPKLFWISAGAPLASVILSTILVFALKADGHGISTIGKLQQGLNPPSWNMLRFQHSHLPLVIKTGLVTGIISLTEGIAVGRTFAAIKDYRVDGNKEMIAIGLMNVLGSFTSCYVTTGAFSRSAVNHNAGAKTAVSNIIMSVTIMVTLLFLMPLFQYTPNLVLAAIIVTAVIGLIDVPAAYAIWKVDKFDFVVMLCAFFGVILISVQHGLAIAVGISIFKIILQITRPKTVMLGNIPGTDIYRNLDHYKDAMGVRGFLILGIEAPVNFANATYLNERILRWIEEYEAEDDVKKEGGGLQFVVLELSAVSGIDTSGVLLFKDLRRALEKKDVELVLVNPLGEVLEKLQKADENGEILRPNNVYLTVGEAVASLSATVKGQCSTTI 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 144410 147824 - CmoCh04G000270.1 Cmo04g00027 379002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00027 670 Gene3D STAS domain 513 660 IPR036513 -
Cmo04g00027 670 PANTHER SULFATE TRANSPORTER 39 660 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cmo04g00027 670 TIGRFAM sulP: sulfate permease 89 637 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cmo04g00027 670 PANTHER BNAA09G30120D PROTEIN 39 660 IPR030313 -
Cmo04g00027 670 MobiDBLite consensus disorder prediction 1 31 - -
Cmo04g00027 670 CDD STAS_SulP_like_sulfate_transporter 534 651 - -
Cmo04g00027 670 Pfam STAS domain 534 654 IPR002645 -
Cmo04g00027 670 ProSiteProfiles STAS domain profile. 533 658 IPR002645 -
Cmo04g00027 670 SUPERFAMILY SpoIIaa-like 541 658 IPR036513 -
Cmo04g00027 670 Pfam Sulfate permease family 102 482 IPR011547 GO:0016021
Cmo04g00027 670 ProSitePatterns SLC26A transporters signature. 131 152 IPR018045 GO:0008271|GO:0008272
Cmo04g00027 670 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00027 Cmo-Chr4:144410 Cmo17g00784 Cmo-Chr17:7547412 0 dispersed
Cmo04g00027 Cmo-Chr4:144410 Cmo08g00647 Cmo-Chr8:4222627 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00027 K17471 - csv:101219163 1117.45