Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00033 ATGAAACTTATGGTTTTGAGGTACTCTCCGTTTTTCTTGGTCTTGTTGGTTTGTGTACTGCCTCTGGTTCAAGCTGGAGATGTAGAAGCTCTGTTGGCATTGAAAGCATCTCTCGACCCTGGGAACTCGCTGCCATGGCGAGGAAGTTCCATCTGCAACTGGCAAGGCGTAAAAGAGTGCACAAATGGACGGGTAACTAAGCTCGTTTTGGAACATCTAAACCTCTCTGGTGTTCTTAACGACAAAATTTTGAATCGTTTAGATCAGCTTCGTGTTCTTAGTTTCAAAGGAAATTCACTTTCCGGTCAAATCCCTGACCTTTCGGGTCTCGTTAATCTCAAATCCCTCTATCTGAGTGACAACAACTTTTCCGGCGAGTTTCCGAGCTCCATCTCCTACCTTCACCGCTTGAAGGTCATCGTCGTTTCCGGTAACCAAATATCTGGCCCCATTCCAGACTCGCTGCTGAAACTCCGGCGTCTCTATGTTCTACACCTTCAGGACAACCAATTCAGTGGCTCCATCCCTCCTTTCAAGCAAACCAGTCTTCGATTCTTCAATGTCTCTAACAACCGACTCTCCGGCGACATCCCAGTAACCCCCACCTTGGTCCGCTTCAATGTGTCGTCATTTTCCGGCAACCTGGAACTTTGCGGAGAACAAATTCAGAAGCCCTGTGGAAATGTTGCCATTGCGCCATCATCGAGTCCCTCTTATCCGCAAATCACTGGCTCAAGCTCGTCTTCAAGACGCACCAAATTGGTCAAGATAATAGTAGGAAGCGTTGGTGGGTTTGTCGGACTTCTATTGATCATTCTTCTACTGTGTATGATTTGCAAATGCAGGGAAAGAAAGAGCCTATCCGAGGTCAGAAACAAAGGAATCGACGACGAGGGGATGAGGATGGAGGAAGCATCTGGAACCTCCGCCGGCGGCAGAGGAGGTAATAATGGAGGAAAGCAAGGGGGATTTTCATGGGAAAGTGAAGGACTAGGAAGCCTAGTGTTCTGCGGAGCAGGGGATCAGAAAATGACTTATAGCTTGGAAGATCTGTTGAAAGCTTCGGCGGAGACTTTGGGCAGAGGGACCATGGGAAGCACATACAAGGCTGTGATGGAATCTGGGTATATTGTTACAGTGAAACGGCTGAAGGATGCAAGGTACCCTCGAGCAGAGGAGTTCGGACGGCAGATGGAGGTTCTTGGGCGGCTCAGACACCCCAACTTGGTCCCTCTCAGGGCCTATTTCCAGGCTAAGGAAGAACGCTTGCTCGTATATGATTATTTCCCTAATGGCAGTCTCTTCTCTCTCATCCACGGATCGAGAACTTCAGGCGGAGGAAAGCCTCTTCATTGGACATCCTGCCTTAAAATAGCTGAAGACTTGGCCAATGGTTTGTTGTATATCCACCAGAACCCTGGTTTAACCCATGGAAACCTGAAATCCTCAAATGTACTACTAGGATCTGATTTCGAGTCATGTCTTACTGATTACGGACTTAACTTATTCCGAGATCCCGATTCACTTGAAGAATCTAGTGCAACTTCACTCTTTTACCGAGCTCCTGAATGCCGTGACATCCGTAAGCCAACCACACAACAAGCTGACATCTATAGCTTTGGTGTTCTTCTGTTGGAGCTTCTAACAGGAAAAACGCCATTTCAAGATCTAGTCCAAGAACATGGTTCTGACATTCCCAAGTGGGTTAATTCCGTTAGAGAAGAGGAGACAGAGTCTGGGGATGATCCTGCATCTGGGAACGAGGCATCGGAAGAGAAACTTCAAGCTCTTTTGAACATTGCAATGGCTTGTGTTTCGCTAATGCCACAAAACCGACCAATGATGAGAGAAGTTCTAAAGATGATAAGAGATACAAGAGCAGAGGTTCAAATCTCATCCAACAGTAGTGACCATTCACCAGGTAGCTGGTCTGATATTGTCCAGAGTTTGCCCAGGGATGAACATTTAGTTTCGACAAAACAAGAAGCAGAGAAGGAGCGAGCTGATGCACTTGGTTCATCCTCGTCTTGCCGTTCATTTGATAGGAAATAA 2052 46.93 MKLMVLRYSPFFLVLLVCVLPLVQAGDVEALLALKASLDPGNSLPWRGSSICNWQGVKECTNGRVTKLVLEHLNLSGVLNDKILNRLDQLRVLSFKGNSLSGQIPDLSGLVNLKSLYLSDNNFSGEFPSSISYLHRLKVIVVSGNQISGPIPDSLLKLRRLYVLHLQDNQFSGSIPPFKQTSLRFFNVSNNRLSGDIPVTPTLVRFNVSSFSGNLELCGEQIQKPCGNVAIAPSSSPSYPQITGSSSSSRRTKLVKIIVGSVGGFVGLLLIILLLCMICKCRERKSLSEVRNKGIDDEGMRMEEASGTSAGGRGGNNGGKQGGFSWESEGLGSLVFCGAGDQKMTYSLEDLLKASAETLGRGTMGSTYKAVMESGYIVTVKRLKDARYPRAEEFGRQMEVLGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSRTSGGGKPLHWTSCLKIAEDLANGLLYIHQNPGLTHGNLKSSNVLLGSDFESCLTDYGLNLFRDPDSLEESSATSLFYRAPECRDIRKPTTQQADIYSFGVLLLELLTGKTPFQDLVQEHGSDIPKWVNSVREEETESGDDPASGNEASEEKLQALLNIAMACVSLMPQNRPMMREVLKMIRDTRAEVQISSNSSDHSPGSWSDIVQSLPRDEHLVSTKQEAEKERADALGSSSSCRSFDRK 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 212885 217823 - CmoCh04G000330.1 Cmo04g00033 379008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00033 683 MobiDBLite consensus disorder prediction 629 646 - -
Cmo04g00033 683 MobiDBLite consensus disorder prediction 568 589 - -
Cmo04g00033 683 Pfam Leucine rich repeat 112 171 IPR001611 GO:0005515
Cmo04g00033 683 Pfam Protein kinase domain 356 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00033 683 SUPERFAMILY Protein kinase-like (PK-like) 357 633 IPR011009 -
Cmo04g00033 683 Pfam Leucine rich repeat N-terminal domain 26 57 IPR013210 -
Cmo04g00033 683 Gene3D Ribonuclease Inhibitor 180 229 IPR032675 -
Cmo04g00033 683 MobiDBLite consensus disorder prediction 629 683 - -
Cmo04g00033 683 MobiDBLite consensus disorder prediction 655 671 - -
Cmo04g00033 683 Gene3D Ribonuclease Inhibitor 25 179 IPR032675 -
Cmo04g00033 683 Gene3D Transferase(Phosphotransferase) domain 1 429 643 - -
Cmo04g00033 683 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 11 648 - -
Cmo04g00033 683 SUPERFAMILY L domain-like 28 218 - -
Cmo04g00033 683 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 648 - -
Cmo04g00033 683 ProSiteProfiles Protein kinase domain profile. 353 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00033 683 Gene3D Phosphorylase Kinase; domain 1 336 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00983 Cmo-Chr3:7402802 Cmo04g00033 Cmo-Chr4:212885 1.33E-153 dispersed
Cmo04g00033 Cmo-Chr4:212885 Cmo07g00705 Cmo-Chr7:3176990 1.03E-163 dispersed
Cmo04g00033 Cmo-Chr4:212885 Cmo04g01061 Cmo-Chr4:5308080 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74221 PF00069 Pkinase 5.50E-36 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00033 - - cmax:111483350 1254.2